KEGG   Thermococcus barophilus: TERMP_00489
Entry
TERMP_00489       CDS       T01377                                 
Name
(GenBank) hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
tba  Thermococcus barophilus
Pathway
tba03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tba00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TERMP_00489
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tba03019]
    TERMP_00489
Messenger RNA biogenesis [BR:tba03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     TERMP_00489
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     TERMP_00489
SSDB
Motif
Pfam: ECR1_N EXOSC1 S1 Auto_anti-p27 OB_RRP5_4th Zn_ribbon_3 Trm112p FtrD-like DZR Zn_Ribbon_TF HVO_2753_ZBP A2L_zn_ribbon DZR_2 YnfU Zn_ribbon_PaaD HypA
Other DBs
NCBI-ProteinID: ADT83466
UniProt: F0LJK0
LinkDB
Position
complement(404630..405232)
AA seq 200 aa
MDVENRKKKSVKNGDFVLPGDYLGVIEEFLPGDGVIEENGELYSTRAGKVKINQEKMEIS
VVPVTDTPPIPKVGQIVIAKVIEVKPQAAIVQLLRIEGREDYREIATSKLAGIHISQVKE
GFVEDMSKEFKIGDIVRARVLTDEKSPIQLTTRAPDLGVVFALCSNCKTPLVRRGNQLIC
PKCGRIETRKLSAFYRKIKV
NT seq 603 nt   +upstreamnt  +downstreamnt
atggatgttgaaaataggaagaaaaaatcagtgaaaaacggtgattttgttcttccaggg
gattatctgggagttattgaggagttcctccctggagatggtgttattgaagaaaatggg
gagctctattcaacaagagctggaaaggttaaaataaaccaagaaaaaatggagataagt
gttgttccagttacagacacccctccaattccaaaagttggacagattgttattgcaaaa
gtaatcgaggtaaaacctcaagcagcaattgttcagcttctcagaatagaaggaagggag
gattatagggaaatagcaacatcaaagctcgctggtatccacatttcccaagtaaaagaa
ggctttgttgaggatatgagcaaagaatttaaaataggagacatagtgagggcgagggtt
ttgactgatgaaaaaagcccaattcagctgacaacaagagcaccggacttgggtgttgtt
tttgcactgtgttcaaactgtaagactcccctcgtgaggaggggaaatcagctcatatgt
cctaagtgtggaaggatcgaaacaagaaagctttcagcattctacagaaagattaaggtt
tag

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