Thermococcus barophilus: TERMP_00489
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Entry
TERMP_00489 CDS
T01377
Name
(GenBank) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
tba
Thermococcus barophilus
Pathway
tba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TERMP_00489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tba03019
]
TERMP_00489
Messenger RNA biogenesis [BR:
tba03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TERMP_00489
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TERMP_00489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
Auto_anti-p27
OB_RRP5_4th
Zn_ribbon_3
Trm112p
FtrD-like
DZR
Zn_Ribbon_TF
HVO_2753_ZBP
A2L_zn_ribbon
DZR_2
YnfU
Zn_ribbon_PaaD
HypA
Motif
Other DBs
NCBI-ProteinID:
ADT83466
UniProt:
F0LJK0
LinkDB
All DBs
Position
complement(404630..405232)
Genome browser
AA seq
200 aa
AA seq
DB search
MDVENRKKKSVKNGDFVLPGDYLGVIEEFLPGDGVIEENGELYSTRAGKVKINQEKMEIS
VVPVTDTPPIPKVGQIVIAKVIEVKPQAAIVQLLRIEGREDYREIATSKLAGIHISQVKE
GFVEDMSKEFKIGDIVRARVLTDEKSPIQLTTRAPDLGVVFALCSNCKTPLVRRGNQLIC
PKCGRIETRKLSAFYRKIKV
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgaaaataggaagaaaaaatcagtgaaaaacggtgattttgttcttccaggg
gattatctgggagttattgaggagttcctccctggagatggtgttattgaagaaaatggg
gagctctattcaacaagagctggaaaggttaaaataaaccaagaaaaaatggagataagt
gttgttccagttacagacacccctccaattccaaaagttggacagattgttattgcaaaa
gtaatcgaggtaaaacctcaagcagcaattgttcagcttctcagaatagaaggaagggag
gattatagggaaatagcaacatcaaagctcgctggtatccacatttcccaagtaaaagaa
ggctttgttgaggatatgagcaaagaatttaaaataggagacatagtgagggcgagggtt
ttgactgatgaaaaaagcccaattcagctgacaacaagagcaccggacttgggtgttgtt
tttgcactgtgttcaaactgtaagactcccctcgtgaggaggggaaatcagctcatatgt
cctaagtgtggaaggatcgaaacaagaaagctttcagcattctacagaaagattaaggtt
tag
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