Thermococcus barophilus: TERMP_00599
Help
Entry
TERMP_00599 CDS
T01377
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tba
Thermococcus barophilus
Brite
KEGG Orthology (KO) [BR:
tba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tba03016
]
TERMP_00599
Enzymes [BR:
tba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TERMP_00599
Transfer RNA biogenesis [BR:
tba03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TERMP_00599
Prokaryotic type
tRNA splicing ligases
TERMP_00599
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Lig_C
Motif
Other DBs
NCBI-ProteinID:
ADT83576
UniProt:
F0LKB8
LinkDB
All DBs
Position
complement(510542..511981)
Genome browser
AA seq
479 aa
AA seq
DB search
MVPLKRIDQIRWEIPKFDKRMRVPGRVYADDVLIQKMRQDRTLEQAANVAMLPGIYKYSI
VMPDGHQGYGFPIGGVAAFDAKEGVISPGGVGYDINCGVRLIRTNLTEKDVRPKIKQLID
TLFKNVPSGLGSKGRVRLQWTQLDDVLAEGAKWAVDNGYGWREDLERLEEGGGMEGANPS
YVSDTAKRRGAPQLGSLGSGNHFLEVQVVDKVFDPEVAEVYGLFEGQVVVMVHTGSRGLG
HQVASDYLRIMEKANRKYRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITH
WVRESFEEVFRQKAEDLGMHIVYDVAHNIAKLEEHEVDGRKVKVVVHRKGATRAFPPGHE
AVPRIYRDVGQPVLIPGSMGTASYVLAGTEGAMKEAFGSTCHGAGRVLSRKAATRQYRGD
RLRNELMQRGIYIRAASLRVVAEEAPGAYKNVDNVVNVVAKAGIAKLVARMRPIGVAKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggttccattgaaaaggatagatcagataagatgggagatacccaagtttgacaagaga
atgagggttcccgggagagtctatgcagatgatgttttaattcaaaaaatgcgtcaagat
agaacacttgagcaagctgcgaatgtagccatgcttcctggaatttacaagtattctata
gtcatgccagatggtcatcagggatatggtttcccaattggtggtgttgcggcttttgac
gccaaagaaggagttatcagcccaggtggagtgggctatgacatcaactgtggagtgagg
ttaatcagaacaaaccttaccgagaaggatgtaagaccaaagatcaagcaactcattgat
acgctcttcaagaacgttccaagcggattgggtagcaaaggaagggtcaggcttcagtgg
acccagcttgatgacgttttagcagagggtgcaaagtgggcagttgacaacggctacgga
tggagagaggacttggagagactggaagaaggagggggaatggaaggagcaaacccctct
tacgtaagtgatacagcaaagagaagaggtgcaccacagcttggctctcttggcagcgga
aatcacttccttgaggtgcaagttgtggacaaggtattcgatccagaagtggctgaggtt
tacggccttttcgaggggcaagtggttgtgatggttcacacaggatcaagaggtttgggt
catcaggttgcaagcgactatctcagaattatggaaaaagccaacagaaaatacaggatc
ccatggccagacagagaacttgtcagcgtcccgttccaaagcgaggagggacagagatac
ttcagtgctatgaaagctgctgcaaacttcgcttgggcaaacaggcagatgatcacccac
tgggtaagggagagctttgaagaagtgttcagacaaaaagctgaagatcttgggatgcac
attgtttatgatgttgcccacaacatagccaagcttgaggagcatgaggtagatggaaga
aaagttaaggttgttgttcacagaaaaggtgctacaagggcattcccacctgggcatgag
gcggtgccaaggatttacagagacgtcgggcagccggtgcttattcctggttcaatggga
accgcaagctatgtcttagctggaaccgaaggggcaatgaaagaagcatttggttcaaca
tgccacggcgctggaagagttctcagcagaaaagccgctacaaggcagtacagaggggac
aggcttagaaatgagctcatgcagagaggaatctacatcagggcagcgagtctaagggtt
gtcgctgaagaggctccgggggcttataagaacgttgacaacgtcgtcaatgtcgttgca
aaggcaggaattgcaaagctggttgcaaggatgagacctattggagttgccaagggctga
DBGET
integrated database retrieval system
