Thermococcus barophilus: TERMP_01196
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Entry
TERMP_01196 CDS
T01377
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tba
Thermococcus barophilus
Pathway
tba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TERMP_01196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tba03019
]
TERMP_01196
03009 Ribosome biogenesis [BR:
tba03009
]
TERMP_01196
Enzymes [BR:
tba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TERMP_01196
Messenger RNA biogenesis [BR:
tba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TERMP_01196
Ribosome biogenesis [BR:
tba03009
]
Prokaryotic type
rRNA helicases
TERMP_01196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADT84172
UniProt:
F0LN43
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All DBs
Position
1051259..1052428
Genome browser
AA seq
389 aa
AA seq
DB search
MLFGDKKMSFEKLGLSENTLGAVRRKGFSEPTDIQREVIPLFLRGDADIVGQSQTGTGKT
ASFALPLVDVINEYEREVQAIILTPTRELALQVADEIKSLRGKKRIKVLSVYGGQPIGPQ
IRALRKGAHIVVGTPGRVLDHIRRGTLRLDGIQYFILDEADRMLDMGFIDDIRAIFRETP
RDKRVLMFSATMPREVLKLAKRYMKEYELIRTSSDEPVPNLVEQEYIEVVPARKISVLER
ILNSEFYGIVFCQTKRETRILAEKLARIGYSAEALNGDMSQKSRERALMRFKRRKINILV
ATDVAARGIDVQDITHIVNYSLPQNAEMYIHRIGRTGRAGKKGKAITFIMPGEYRRLRYI
ENIAKVSIKKSKLQESIDREKRRDSRKIY
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
gtgcttttcggagacaagaaaatgagttttgaaaaattaggactctcagaaaatacactg
ggagcagtcagaagaaaagggttctcagaacctacagacattcagagggaagttatccct
cttttcttaagaggagatgcagatatagttggacaatcacagacaggaactggaaaaaca
gcatcattcgcattaccgcttgtggatgttatcaacgagtatgaaagggaagtccaagca
ataattttaacgccaacaagagagcttgctcttcaagtagctgacgagataaagtctctt
agaggcaagaaaaggataaaagttctttcagtgtacggaggacagccaataggtcctcag
ataagagcccttagaaaaggagcccacatagtggttggaactcctggaagagttctcgac
cacatcaggaggggcacattgaggcttgacggaattcaatacttcatcttagatgaagct
gacagaatgcttgatatgggtttcatagacgatataagagcaatattcagagaaacacca
agggataagcgtgttctcatgttttcagcaacgatgccccgtgaagttttgaaattagca
aaacgatacatgaaggaatatgaactgataagaacaagcagcgacgagccagttccaaac
cttgtggagcaggagtatattgaagtcgtaccagcaagaaaaatatccgtgttggaaaga
atactaaacagtgaattctatgggatagtcttctgccaaacgaagagggagaccaggata
ctggcagaaaagcttgcacgtataggatatagcgctgaagctttaaacggagatatgagt
caaaaaagcagagaaagggctctgatgcgctttaaaaggcgaaagataaacatcttagtt
gccacagatgttgctgcaagaggaatagatgttcaagacatcacccacattgtaaactat
tctttgccacaaaacgctgaaatgtatatacacaggattggcagaacaggaagagcgggc
aaaaaaggaaaagcaataactttcatcatgccgggagagtacaggaggttaaggtacatt
gagaacattgcaaaagttagcataaagaaatcaaagcttcaagaaagtatagacagagaa
aagaggagagactcaagaaagatatactga
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