Thermus brockianus: A0O31_01006
Help
Entry
A0O31_01006 CDS
T04600
Name
(GenBank) DNA polymerase III subunit alpha
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tbc
Thermus brockianus
Brite
KEGG Orthology (KO) [BR:
tbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tbc03016
]
A0O31_01006
Enzymes [BR:
tbc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A0O31_01006
Transfer RNA biogenesis [BR:
tbc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A0O31_01006
Prokaryotic type
tRNA splicing ligases
A0O31_01006
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Intein_splicing
LAGLIDADG_3
HTH_23
HTH_58
HTH_38
HTH_7
Motif
Other DBs
NCBI-ProteinID:
APD09167
UniProt:
A0A1J0LUQ4
LinkDB
All DBs
Position
complement(927422..930025)
Genome browser
AA seq
867 aa
AA seq
DB search
MGFDINCLPPGTRVLAHDRYTRPIEELAQERDPLLVAWRLGERPEAARALFLLSREGEEL
VRLRTEGGFVLEATPDHPVYTPAGMRPLGELRPGDQVAVHPFRGLPYEPPPPLTLVGEEA
AEAWAKELGFPRAPLELRARGLLPLRADHPHLPALLRLMGYSLGDGTLYRSGGKAYLVLY
GAREGLLEAKADLERLGFRAGGPYLRWRRHSFRGRAFSAEEASLKISSRALFLLLRALGL
PEGARAKQGFRLPPWLFALPPWLKANFLAGLFGAELSAPRAVSGHGYNLLPPVLSQSKRR
SALEEGRAFMQDLARLLASVGLEVQDLREEADWEEPEDPSHRFKLILRSTPENLARLYEE
IGYAYAPTKARLALLAAFYLRKKEAHLAEREALAKKAWALRKAGYSVKAIAQGLGVSRRF
VERTLYEERRSFRPQGFPTFPEFVAACEGMLFDRVVAVERVPYGGRVYDLSMAHPDHNFV
AEGFVVSNCGVRLLTSHLTLEDLLPRQRELADALYRLVPSGVGSERRDVRFSKRELKEIL
KEGAGWLVKRGFGYPEDVRFIESEGRLPWANPDKVSERAFERGTPQIGTLGSGNHFLEVQ
YVDEVYDLEAAEAYGLFRGQITVLIHTGSRGLGHQVCQDYVERFLKVAPRYGIELVDKQL
AAAPIRSPEGEDYLQAMAAAANFAFANRQLIAHFVREAFEAVGYAPRDHGLRVLYDLAHN
NAKFEEHRGRRVLVHRKGATRAFGPGHLEIPPEYRKVGQPVLVPGDMGRYSYVLAGTARA
MEVSFGSSCHGAGRKMSRHQAKRVARERNLVKELAERGILVRAATRATVDEEMPEAYKDV
SLVVEAVEGAGIGKKVARLRPLIVVKG
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
gtggggtttgacatcaactgcttgcccccgggaacccgtgtcctagcccacgaccgctac
acgcggcccattgaggagctcgcccaagagcgagatcccctcttggtggcctggcgctta
ggggagcgccccgaggcggcgcgcgcccttttcctcctttcccgggaaggggaggagttg
gtgcgcctccgcaccgaagggggttttgtcctcgaggccacccccgaccacccggtctat
acccctgcaggaatgcgccccctgggcgaactgcggccgggcgaccaagtggcggttcac
cctttccgggggctcccttacgaaccgcctcctcccctgacccttgtgggggaggaggcg
gcggaggcttgggctaaggagctgggctttccccgggcccccttggagctccgggcgcgg
gggcttctccctcttagggcagaccatccccacctgccagcccttttgcgcttgatgggg
tactccctgggggatgggaccctgtaccgctctgggggaaaggcctacctcgtgctctac
ggggcaagggaaggcctcctggaggccaaggccgatctggagcgtctaggcttccgggcg
gggggcccttatctgcgctggcgccgccacagcttccggggccgggccttttccgcggag
gaggctagcctgaagatatcctcccgcgccctctttctccttctccgcgccctcgggctt
cccgagggggccagggccaagcagggatttaggctcccgccttggctttttgcccttccc
ccttggcttaaggccaactttctagcggggcttttcggggcggaactctctgcgcccagg
gccgtgagtggccacggctacaacctcctgcccccagtcctttcccagtccaagcgcaga
agcgccttggaagagggacgtgcttttatgcaggacctcgcccggttgctggcctccgtg
ggattagaggtgcaggacctgcgggaagaggcggattgggaggagccggaggacccttcc
caccgcttcaagctcatcctccgatccaccccggaaaacctggcccggctttacgaggaa
ataggctacgcctacgcccccaccaaggcccggctggcccttctggccgccttttacctt
cggaagaaggaggcgcacctggccgagcgggaggccctggccaagaaggcttgggcgctc
cggaaggcgggctattcggtgaaggccatcgcccaggggcttggggtctcacgccgcttt
gtggagcgcaccctttacgaggagcgccgttccttccgtccccaaggctttcccaccttt
cccgagttcgtggcggcttgcgagggcatgctctttgaccgggtggtggccgtggaacgg
gtgccctatgggggtagggtttacgacctttccatggcccatccagaccacaactttgtg
gcagaagggttcgtggtttccaactgcggggtccgccttttgacctcccacctcaccttg
gaagacctcctcccccgccagcgggagctcgccgacgccctctaccgcctggtgccctcc
ggggtggggagcgaaaggcgggacgtgcgctttagcaagcgggagctcaaggagatcctt
aaggagggggcggggtggctggtaaagcggggcttcggttacccggaggacgtgcgcttc
attgagtccgaaggccgcctcccttgggccaaccccgacaaggtctcggaaagggccttt
gagcggggaaccccccagatcggcaccttgggaagcggcaaccacttcttggaggtgcag
tacgtggacgaggtgtacgacctcgaggccgccgaggcctacgggctttttaggggccag
atcaccgtcctcatccacacgggaagccggggcctaggccaccaggtctgccaggactac
gtggagcgcttcctcaaggtagcccctcggtacgggattgagctcgtggacaagcagctc
gccgctgcccccatacgaagccccgagggggaagactacctccaggccatggccgctgct
gccaacttcgccttcgccaaccgccagctcatcgcccacttcgtgcgggaggcctttgag
gcggtgggctacgcccctcgggaccacggcctccgggtcctctacgacctcgcccacaac
aacgccaagtttgaggagcacagggggcgccgggtcctggtccaccgcaagggggccacc
cgggcctttgggcctggccacctggagatccccccggagtaccggaaggtgggccagccc
gtcctggtgccgggggatatgggccgctactcctacgttctggcgggtacggctagggcc
atggaggtttccttcggctccagttgccacggggcggggcggaaaatgagccggcaccag
gcgaagcgggtggccagggagcggaacctggtcaaggagcttgcggaaaggggcatcctg
gtcagggctgccacccgggccacggtggacgaggagatgcccgaggcctacaaggacgtg
tccctggtggtggaggcggtggagggggcggggattggcaagaaggtggcccgcctccgg
cccctcatcgtggtgaagggctaa
DBGET
integrated database retrieval system
