Thiobacillus denitrificans: Tbd_0037
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Entry
Tbd_0037 CDS
T00275
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tbd_0037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbd03021
]
Tbd_0037
03019 Messenger RNA biogenesis [BR:
tbd03019
]
Tbd_0037
Transcription machinery [BR:
tbd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Tbd_0037
Messenger RNA biogenesis [BR:
tbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Tbd_0037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
ATPase_2
S1CSD-TOTE-2
AAA
ResIII
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
AAZ95990
UniProt:
Q3SMQ1
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All DBs
Position
38806..40065
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AA seq
419 aa
AA seq
DB search
MHLSELKQKPITELLEVAAAHGIDNANRFRKQELIFTILKTLAKRGESIYGDGVLEVLPD
GFGFLRSPETSYLANTDDIYVSPSQIRRFNLHTGDKIEGEIRTPKDGERYSAMTKLDLIN
GEPPEASKNKILFENLTPLHPDKPLKLEREIKAEENITSRVIDIVAPIGKGQRGLLVAPP
KSGKTVMLQHIAHAISSNHPEVVLFVLLIDERPEEVTEMSRTVRGEVVASTFDEPASRHV
QVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNTVQPASGKVLTGGVDANALQKPKRF
FGAARNIEEGGSLTILATALIETGSRMDDVIYEEFKGTGNLEIHLDRKMAEKRQYPAINV
NRSGTRREELLMPHDILQKVWVLRKLLYPMDDMEAMEFLLDKIRATKNNGEFFDSMRRG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacctctccgaactcaagcaaaagccgatcaccgaactgctcgaagtcgccgccgcc
catggcatcgacaacgcgaaccggtttcgcaagcaggaactgattttcaccatcctgaag
acgctcgcgaagcgtggtgaaagcatctacggtgacggcgtgctcgaagtgctgccggac
ggcttcggcttcctgcgctcgcccgaaacgtcttacctcgcgaacaccgacgacatctac
gtgtcgccgtcgcagatccgccgcttcaacctgcataccggcgacaagatcgagggcgag
atccgcacgcccaaggacggcgagcgctattcggcgatgaccaagctcgacctgatcaac
ggcgagccgcccgaggccagcaagaacaagatcctgttcgagaacctgaccccgctgcat
ccggacaagccgctcaagctcgagcgcgagatcaaggcggaggagaacatcaccagccgc
gtgatcgacatcgtcgcgccgatcggcaagggccagcgcggcctgctcgtcgccccgccg
aagtccggcaagaccgtgatgctgcagcacatcgcgcacgcgatcagctccaaccatccc
gaggtcgtgctgttcgtgctgctgatcgacgagcgccccgaggaagtgaccgaaatgagc
cgcaccgtgcgcggcgaagtcgtcgcgtcgacgttcgacgagcccgcgagccgccacgtg
caggtcgccgagatggtgatcgagcgcgccaagcgccttgtcgagcacaagaaggacgtc
gtgatcctgctcgattcgatcacccgcctcgcgcgcgcctacaacacggtccagccggcg
tccggcaaggtgctgacgggcggtgtcgacgccaacgccctgcagaagccgaagcgcttc
ttcggcgccgcgcgcaacatcgaggaaggcggcagcctgacgatcctcgcgaccgcgctg
atcgaaaccggcagccgcatggacgacgtcatctacgaggaattcaagggcaccggcaac
ctcgagatccacctcgatcgcaagatggccgagaagcgccagtacccggcgatcaacgtc
aaccgctccggcacccgccgcgaggaactgctgatgccgcacgacatcctgcaaaaggtg
tgggtgctgcgcaaactgctctatccgatggacgacatggaggcgatggaattcctcctc
gacaagatccgcgcgacgaagaataacggcgagttcttcgattcgatgcggcggggctga
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