Thiobacillus denitrificans: Tbd_0226
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Entry
Tbd_0226 CDS
T00275
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd00300
Lysine biosynthesis
tbd00470
D-Amino acid metabolism
tbd01100
Metabolic pathways
tbd01110
Biosynthesis of secondary metabolites
tbd01120
Microbial metabolism in diverse environments
tbd01230
Biosynthesis of amino acids
Module
tbd_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Tbd_0226
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Tbd_0226
Enzymes [BR:
tbd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
Tbd_0226
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Gene cluster
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Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
AAZ96179
UniProt:
Q3SM71
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All DBs
Position
complement(248334..249578)
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AA seq
414 aa
AA seq
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MNAPHRIDGRLHLEGVALDTLAERCGTPLYVYSRAALEAAYRAYEEAFAATPHLICYAVK
ANSSLALLNLFARMGAGFDIVSGGELARVLSAQGDPRKVVFSGVGKRVDEMRAALEAGIL
CFNVESTSELHRLNRVAGELGKVAPVSFRVNPDVDPKTHPYISTGLKENKFGVPIAEAPA
LYRTAAALPHIRVTGIDCHIGSQLLDLSPLADAADRVFALVDALAAEGIALEHIDLGGGV
GISYRGETAPDLAGYGRVLAERFAGRRETLIVEPGRSLVGNAGLLLARVEYLKLGADKNF
AIVDAAMNDLMRPALYEAYHEIVEVIARPLPKRRYDVVGPICETGDFLGSARELSLDEGD
LVALLSSGAYGMSMSSNYNSRPRAAEILVDKKEIHLIRERETQEGLMAGERLLD
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgctccccatcgcatcgacggccgcctccatctcgagggcgtggccctggacacg
ctcgccgagcgctgcggaacccccctctacgtctactcgcgtgccgccctcgaagccgcg
taccgcgcctatgaagaagcgttcgccgcgacgccgcatctgatctgttacgcagtcaag
gccaactcgagcctggccctcctgaacctgttcgcccggatgggcgccggtttcgacatc
gtctccggcggcgagctcgcccgcgtactctcggcgcagggcgatccgcgaaaagtcgtg
ttctcgggcgtcggcaaacgcgtggacgagatgcgcgccgcgctcgaggcgggcattctc
tgcttcaacgtcgaatcgacgagcgagctgcaccggctgaaccgcgtggcgggagagctc
ggcaaggtcgcgccggtctccttccgcgtcaatccggacgtcgacccgaagacccatccc
tatatctcgacggggctcaaggagaacaagttcggcgtcccgatcgcggaggccccggcg
ctctatcgcacggcagccgcacttccgcacatcagggtgaccggcatcgactgccacatc
ggctcgcagctgctcgacctgtccccgcttgccgacgcagcggaccgcgtgttcgcactc
gtcgacgcgctcgcggccgaaggcattgcgctcgaacacatcgacctcggcggcggcgtc
ggaatctcctatcgcggagaaaccgcgcccgacctcgccggctacggccgcgttctcgcc
gaacgctttgccggccggcgagaaacgctgatcgtcgagcccggccgctcgctcgtcggc
aacgccggccttctgctcgcgcgtgtcgaatacctgaagctgggcgcagacaagaacttc
gcgatcgtcgacgccgcaatgaacgacctcatgcggcccgcactgtacgaggcttatcac
gagatcgtcgaggtgatcgcgcgcccgctgcccaagcggcgctacgacgtcgtcggcccg
atctgcgagaccggcgatttcctgggatccgcacgcgagctttcgctcgacgagggcgac
ctcgtcgcgctgctttcgtcgggcgcatacggcatgagcatgtcgtcgaactacaattcg
cgcccccgcgcggcggaaattctcgtcgacaagaaagaaattcatctgattcgcgagcgc
gaaacgcaggaaggcctgatggccggagagcggcttctggactga
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