Thiobacillus denitrificans: Tbd_0383
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Entry
Tbd_0383 CDS
T00275
Name
(GenBank) formamidopyrimidine-DNA glycolase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Tbd_0383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbd03400
]
Tbd_0383
Enzymes [BR:
tbd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Tbd_0383
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Tbd_0383
DNA repair and recombination proteins [BR:
tbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Tbd_0383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
PSMbeta
Motif
Other DBs
NCBI-ProteinID:
AAZ96336
UniProt:
Q3SLR9
LinkDB
All DBs
Position
complement(411196..412008)
Genome browser
AA seq
270 aa
AA seq
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MPELPEVETTRAGLSPRLQGRVLTRVIVREPRLRWPIPPDLDTQLRGLTLHGLARRGKYL
LFDFGAVTQLVHLGMSGSLRLTEPAEPAARHDHVDWRFDDGTILRLRDPRRFGAVLLTEN
APGHPLLAGLGPEPLSTAFDAAYLHTQCQRRKTAIKPLIMDAHVVVGVGNIYASESLFHA
GIRPGVAAHRLSRAACARLADAIKQVLTAAIAAGGSSLRDYVQSSGELGYFQLQTRVYDR
EDAPCRRCATPIRRIVQAQRASFYCPTCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactacccgaagtcgagaccacccgcgccggcctgtcgccccgtttgcagggt
cgcgtgctgacccgcgtcatcgttcgcgagccgcgtctgcgctggccgatcccgcccgac
ctcgacacgcaattgcggggcctcacgctccacggcctcgcccggcgcggcaaatacctg
ctgttcgacttcggcgctgtcacccagctcgtccatctcggcatgtcggggagcctgcgc
ctcaccgagcccgcggagcccgctgcgcgccacgaccacgtcgactggcgcttcgacgac
ggaacgatcctgcgcctgcgcgacccgcgccgcttcggcgcggtgctgctgaccgagaac
gcgcccggacatccgctcctcgccggcctcggtccggaacccctgagcacggcgttcgac
gcggcctatctgcacacgcagtgccagcgtcgcaagaccgcgatcaagccgctcatcatg
gatgcccatgtcgtcgtcggcgtcggtaacatctacgcttcggaatccttgttccacgcc
ggaatccgcccgggcgtcgccgcccaccgcctaagccgggcggcgtgcgcgcggctggcc
gacgcgatcaaacaggtgttgactgcggccatcgcagcaggcggcagttcgctgcgggac
tacgtccaaagcagcggcgaactggggtatttccagttgcagacgcgggtctacgaccgc
gaagacgcgccgtgcaggcggtgcgcaacgccgatccgccgcatcgtccaggcgcagcgt
gcgagcttctactgcccgacgtgccagcgctga
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