Thiobacillus denitrificans: Tbd_0693
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Entry
Tbd_0693 CDS
T00275
Name
(GenBank) polyribonucleotide nucleotidyltransferase protein
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tbd_0693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbd03019
]
Tbd_0693
03016 Transfer RNA biogenesis [BR:
tbd03016
]
Tbd_0693
Enzymes [BR:
tbd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Tbd_0693
Messenger RNA biogenesis [BR:
tbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Tbd_0693
Transfer RNA biogenesis [BR:
tbd03016
]
Prokaryotic type
tRNA degradation factors
Tbd_0693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_RRP5
DUF4142
Motif
Other DBs
NCBI-ProteinID:
AAZ96646
UniProt:
Q3SKX5
LinkDB
All DBs
Position
complement(732249..734369)
Genome browser
AA seq
706 aa
AA seq
DB search
MSAIKKTFTYGRHQVTLETGEIARQASGAVVVNMDDTMVLVTVVAKNEVKPGQDFFPLTV
DYQEKTYAAGRIPGGFLKRESRPSEGETLISRLIDRPIRPLFPEGFFNEVQIIATVMSSN
PEVSADIPALIGASAALSLSGLPFDGPVGAARVGFINGEYVLNPTNAELKDSALDLVVAG
TESAVLMVESEAMELPEDIMLGAVVFGHTQMQAAINAINELADEAGADAWDWAPPAEDTA
MVDRLKALAEDGLQQAYNIKQKRARMAAVDEVRSKAFAELITADMDTVAANHVKDAFHRL
EAGVVRNRILSGQPRIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGR
DEQTIDALEGSYSDRFMLHYNMPPYATGETGRVGSPKRREIGHGRLAKRALLAVLPSKEE
FGYTMRVVSEITESNGSSSMASVCGGCLSLMDAGAPLKAHVAGIAMGLIKEGNRFAVLTD
ILGDEDHLGDMDFKVAGTENGVTALQMDIKITGITKEIMQAALTQAKEGRMHILGIMKAS
VSETHEMSAYAPRIIAMKINPEKIRDVIGKGGAVIRALTEETGTQIDIQEDGSVKIACTS
MEAGELAKKRIEEITAEVEVGKVYEGPVIKLLDFGAIVNVLPGRDGLLHISQIAHERVNT
IGDYLKEGQVVRVKILEADEKGRLRLSMKALLEAPAPTSGGEEHAS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgctatcaagaaaacgtttacctacggtcgccaccaagtcacgctggaaaccggc
gaaatcgcgcgtcaggcgtccggcgccgtcgtcgtcaacatggacgacacgatggtgctc
gtgaccgtggtcgccaagaacgaagtcaagcccggccaggatttcttcccgctgaccgtc
gactaccaggaaaagacctacgccgccggccgcatccccgggggatttctcaagcgcgaa
agccggccgtcggaaggtgaaacgctgatctcccgcctgatcgaccgcccgatccgcccg
ctcttccccgaaggcttcttcaacgaagtgcagatcatcgcgacggtgatgtcgtcgaat
cccgaagtcagcgccgacatccccgcgctgatcggcgcttcggccgcgctctcgctctcc
ggcctgccgttcgacggcccggtcggcgcggcgcgcgtcggcttcatcaacggcgaatac
gtgctcaacccgaccaacgccgaactcaaggattccgcgctcgacctcgtcgtcgccggc
accgaaagcgccgtgctgatggttgaatccgaggccatggaactgcccgaggacatcatg
ctcggcgctgtcgtcttcggccacacgcagatgcaggccgcgatcaacgcgatcaacgag
ctggccgacgaagccggcgccgacgcctgggactgggcgccgccggccgaagacacggcg
atggtcgaccgcctcaaggcgctcgccgaagacggcctgcaacaggcctacaacatcaag
cagaagcgggcacgcatggccgccgtcgacgaggtgcgcagcaaggccttcgccgaactc
atcacggccgacatggacacggtggcggccaaccacgtcaaggacgcgttccaccgcctc
gaagccggcgtcgtgcgcaaccgcatcctctcgggccagccgcgcatcgacggccgcgac
acccgcaccgtgcgcccgatcacgatccgtaccggcgtgctgccgcgcgcccacggctcg
gcgctgttcacgcgcggtgaaacgcaggccctggtcgtgacgacgctcggcacgggccgc
gacgagcagaccatcgacgcactcgagggcagctactccgaccgcttcatgctgcactac
aacatgccgccctatgcgaccggcgaaaccggccgcgtcggctcgcccaagcgtcgcgag
atcggccacggccggctcgccaagcgcgcgctgctggcggtgctgccgagcaaggaagaa
ttcggctacaccatgcgcgtggtctccgaaatcaccgaatcgaacggctcgtcgtcgatg
gcctcggtgtgcggcggctgcctctcgctgatggacgccggcgcgccgctcaaggcgcac
gtcgccggcatcgccatgggcctgatcaaggaaggcaaccgcttcgccgtgctgacggac
attctcggcgacgaagaccacctcggcgacatggacttcaaggtcgcgggcaccgaaaac
ggcgtgaccgcgctgcagatggacatcaagatcacgggcatcaccaaggagatcatgcag
gccgcgctcacccaggcgaaggaaggccgcatgcacatcctcggcatcatgaaggcgtcg
gtctccgagacccatgagatgtcggcctacgcgccgcgcatcatcgcgatgaagatcaat
cccgagaagatccgcgacgtgatcggcaagggcggcgccgtgatccgcgcgctgaccgag
gaaaccggcacccagatcgacatccaggaagacggcagcgtaaagatcgcctgtaccagc
atggaggccggcgaactcgcgaagaagcgcatcgaggaaatcaccgccgaggtcgaagtc
ggcaaggtctacgagggcccggtcatcaagctgctcgacttcggcgcgatcgtcaacgtg
ctgccgggacgcgacggcctgctgcacatctcgcagatcgcccacgagcgcgtcaatacg
atcggcgactacctcaaggaaggccaggtcgtgcgcgtgaagattctcgaggccgacgag
aaaggccgcctgcgcctgtcgatgaaggccttgctcgaagcccccgcgccgacgagcggc
ggcgaagaacacgcgagctga
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