Thiobacillus denitrificans: Tbd_0827
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Entry
Tbd_0827 CDS
T00275
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03030
DNA replication
tbd03430
Mismatch repair
tbd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tbd_0827
03430 Mismatch repair
Tbd_0827
03440 Homologous recombination
Tbd_0827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tbd03032
]
Tbd_0827
03400 DNA repair and recombination proteins [BR:
tbd03400
]
Tbd_0827
Enzymes [BR:
tbd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Tbd_0827
DNA replication proteins [BR:
tbd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Tbd_0827
DNA repair and recombination proteins [BR:
tbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Tbd_0827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
RNase_H_2
Rv2179c-like
DUF7508
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AAZ96780
UniProt:
Q3SKJ9
LinkDB
All DBs
Position
complement(869458..870870)
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AA seq
470 aa
AA seq
DB search
MHTTVIPQRLAFVDLETTGANAARDRVTEIGVVVVDGDRVETWSTLVNPERAIPQFIQQL
TGISNEMVADAPTFARVADELAERLDGRLFIAHNARFDYGFLKHEYQRLGRRFRADVLCT
VRLSRRLFPEHYRHNLDSLIARHGLATEGDRHRALADADLIWQFWRTLQREHEAQALAEA
VAHQLLRPALPPHLDPALLEDLPESPGVYLFYGENDVLLYVGKSVNLRQRVFSHFAADTR
EYKAMQLTQQVRRVEWRETVGELGALLLESRLIKEGAPAHNRRLRRASELCAWRLDEVAP
GDFRPVLVTADDPDFGRDGDLFGPFSSRRQATLALRKIADAHQLCPVVLGLEKPARPDSP
CFAFQVQKCRGACAGKETAGLHSARLMAALAKTKMKSWAYPGAIGLVERDDFLDVEEVHV
VHAWRYLGTAKSEAEIGELLEHAARAPFDLDTYKLLKTQLAKSKFTIRAL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
ttgcacaccaccgtgattccccagcgcctcgccttcgtcgacctcgaaaccaccggcgcc
aacgccgcgcgtgaccgcgtgaccgaaatcggcgtcgtcgtcgtcgacggcgaccgggtc
gagacctggagcacgctcgtcaaccccgagcgcgcgattccgcaattcatccagcagctc
accggcatcagcaacgagatggtcgccgacgcgccgaccttcgcacgcgtcgccgacgaa
ctcgccgagcggctcgacgggcgcctcttcatcgcgcataacgcgcgcttcgactacggc
tttctcaagcacgaataccagcgcctcggccgccgcttccgcgccgacgtgctgtgcacg
gtgcgcctgtcgcgccggctctttcccgaacactaccgccacaacctcgacagcctgatc
gcgcgccacggcctggcaaccgagggcgaccgccaccgtgcgctcgccgacgccgacctg
atctggcagttttggcgcacgctgcagcgcgaacacgaggcgcaggcgctcgccgaggcc
gtcgcgcaccaactcctgcgccccgcgctgccgccgcacctcgatcccgccctgctcgaa
gacctgcccgagtcgccgggggtgtatctcttctatggcgaaaacgacgtgctgctctac
gtcggcaagagcgtcaatctgcgccagcgcgtgttctcgcacttcgcggccgacacccgc
gaatacaaggcgatgcaattgacccagcaggtgcgccgcgtcgagtggcgcgaaacggtc
ggcgaactcggcgcgctcttgctcgaatcgcggctcatcaaggaaggcgcgcccgcacac
aaccggcggctgcgccgcgcgtccgaactctgcgcctggcggctcgacgaagtcgcgccc
ggcgacttccgcccggtgctcgtgaccgccgacgacccggacttcggccgcgacggcgac
ctcttcggcccgttctcgagccgccgccaggcgacgctcgccttgcgcaagatcgccgac
gcgcatcaactctgcccggtcgtcctcgggctcgagaaacccgcgcgccccgacagcccc
tgcttcgcctttcaggtacaaaaatgccgcggcgcctgcgcgggcaaggagacggccggc
cttcacagcgcccggctgatggccgcgctcgcgaaaacgaaaatgaaaagctgggcctac
cccggcgcgatcggactcgtcgagcgcgacgactttctcgacgtcgaggaagtccacgtc
gtgcacgcctggcgctatctgggcaccgcgaagagcgaagccgagatcggcgaactgctc
gaacacgcggcacgcgcgcccttcgatctcgacacctacaagctgctcaagacgcaactc
gccaagtcgaagttcacgatccgcgccctgtag
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