Thiobacillus denitrificans: Tbd_0858
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Entry
Tbd_0858 CDS
T00275
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03030
DNA replication
tbd03430
Mismatch repair
tbd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tbd_0858
03430 Mismatch repair
Tbd_0858
03440 Homologous recombination
Tbd_0858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tbd03032
]
Tbd_0858
03400 DNA repair and recombination proteins [BR:
tbd03400
]
Tbd_0858
Enzymes [BR:
tbd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Tbd_0858
DNA replication proteins [BR:
tbd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Tbd_0858
DNA repair and recombination proteins [BR:
tbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Tbd_0858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AAZ96811
UniProt:
Q3SKH0
LinkDB
All DBs
Position
906765..910190
Genome browser
AA seq
1141 aa
AA seq
DB search
MTDPRFIHLRLHTEYSIVDGLVRVDEAVKRAREIAMPALGVSDLSNTFGWVKFYRAARGA
GVKPIFGCDVWVSNATDRNRPSRLLLLVQHREGYRRLCELLTRAYQENLHRGRAEIDPSW
LAENNGGLLALSGGDGGNVAQAIIDDKPAVARAAAEAWAALFPGRYYLELQRFGQAHTER
LIDGLLDIGAELGLPAVATHPIQFLAADDFKAHEARVCIAEGMMLGDPRRPRPFTAEQYF
KTPDEMAALFADLPEALANSVEIAKRCNLTLELGKSKLPDFPTPDGMGLDDYMRQRAYEG
LAERMAHLYPDEAERAAKRPEYTERLEFELGTIIQMGFPGYFLIVADFINWAKNNGVPVG
PGRGSGAGSLVAYCLRITDLDPLAYDLLFERFLNPERVSMPDFDIDFCQDGRDRVIQYVK
DKYGHAAVSQIATFGTMAAKAVLRDVGRVLDLPYLFVDKFVKLVPNELGISLAEAREKEP
QIDERARNEEELAELLPLAEKLEGITRNVGMHAGGVLIAPGKLTDFCPLYQAEGSDAAVS
QFDKDDVEAIGLVKFDFLGLRTLTILAEAVRFVQRHEDRKDFRLEDLPLDDPAVYRLFAD
GNTTAVFQSESRSAKDLEKRLKGDCFEDIIALMALNRPGPLGSGMVDDFIARKQGKQKPE
YFHPDLEPVLKSTYGIIVYQEQVMLVAQILAGYSLGGADMLRRAMGKKKPEEMAKQRAIF
LEGADKRGVDVKIAERLFDLMEKFAEYGFNKSHSAAYALVAYHTAWLKAYYPAEFMAATM
SSEMSDTDKVRIFYEDCRANGLTMLPPDINLSGYRFDPVSRTEIRYGLGAIKGSGEAAIG
AIVAERGANGPYKGLFDLARRVDKRYLNRRVLEALVKAGAFDSLSDHRASLMASIGVALE
TADRAARSGGQVGLFGEVLEGGGEDLVDVPYWPEQEKLLQEKSALGYFFSGHPFTAYLAE
VSGFAKRRLDSLEPAREPVMLAGVAVSLRTQMTRRGKMLILLLDDATAQVEVVIFNELYE
QSRHLLKDDALLVIEGKVSRDDYSGGVRVTAERIYDLAGARTRFAQGLRLVCNGQSSGRA
LSELLAPYAMEEGGCPVWIEYHNHNARCRVRLGERWRVRLDDRLIESLGGWLKPEAVSVI
Y
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccccgcttcatccatcttcgtctgcacaccgagtattcgatcgtcgacggc
ctggtgcgggtcgacgaggcggtcaaacgggcccgcgagatcgcgatgccggcgctcggc
gtctccgacctgtccaacaccttcggctgggtcaagttctaccgcgcggcgcgcggcgcg
ggcgtcaagccgatcttcggctgcgacgtctgggtgagcaatgcgaccgaccgcaaccgg
ccctcgcgcctgctgctcctggtgcagcaccgcgaaggctaccgccgactgtgcgagctg
ctgacgcgcgcctaccaggagaatctccaccgcggtcgcgccgagatcgacccgtcctgg
ctcgccgagaacaacggaggacttctggcgctgtcgggcggcgacggcggcaacgtcgcg
caggcgatcatcgacgacaagcccgctgtggcacgcgcggcggccgaggcctgggccgcg
ctcttcccgggccgttactacctcgaactgcagcgcttcggccaggcgcacaccgaacgg
ctgatcgacgggctgctcgacatcggcgccgagctcggcctgccggcggtcgcgacgcat
ccgatccagttcctcgcggccgacgatttcaaggcgcacgaggcgcgcgtgtgcattgcc
gaaggcatgatgctcggcgatccgcgccggccgcggcccttcacggcggaacagtacttc
aagacccccgacgagatggcggcgcttttcgccgacctgcccgaggcgctcgccaacagc
gtcgaaatcgccaagcgctgcaatctcacgctcgaactcggcaagagcaagttgcccgac
ttcccgacgccggatggcatgggcctcgacgactacatgcggcagcgcgcgtacgaaggg
ctcgccgagcgcatggcccacctctatccggacgaagccgagcgcgcggcgaagcggccc
gaatataccgagcggctcgaattcgagctcgggacgatcatccagatggggtttccaggc
tatttcctgatcgtcgccgacttcatcaactgggccaagaacaatggcgtgccggtcggg
ccggggcgcggctcgggcgcgggttcgctggtcgcctactgtctgcgcatcaccgacctc
gatccgctcgcctacgacctgctgttcgagcgctttctcaaccccgagcgggtgtcgatg
cccgacttcgatatcgacttctgccaggacggccgcgaccgcgtcatccagtacgtcaag
gacaaatacggccatgcggcagtgtcgcagatcgcgaccttcggcacgatggcggccaag
gccgtattgcgcgacgtcggccgcgtgctcgacctgccttatcttttcgtcgacaagttc
gtcaagctcgtgccgaacgaactcggcatctcgctcgccgaggcgcgcgaaaaggaaccg
cagatcgacgagcgggcgaggaacgaggaagaactcgcggaattgctgccgctcgcggaa
aagctcgagggcatcacgcgcaacgtcggcatgcacgcgggcggcgtgctgatcgcgccg
ggcaagctcaccgatttctgtccgctctaccaggccgaaggctcggacgccgcggtgtcg
cagttcgacaaggacgacgtcgaggcgatcggtctcgtcaagttcgacttcctcggcttg
cgcacgctgacgatcctggccgaggcggtccgcttcgtgcagcgccacgaagaccgcaag
gacttcaggctggaggatctgccgctcgacgacccggcggtgtaccgcctgtttgccgac
ggcaacacgaccgcggtcttccagtccgaatcgcgctcggcgaaggacctcgaaaagcga
ctcaagggcgactgcttcgaggacatcatcgcgctgatggcgttgaaccggccggggccg
ctcggttcgggcatggtcgacgacttcatcgcgcgcaagcagggcaagcagaaacccgag
tatttccatcccgatctcgagccggtgctgaagtcgacctacggcatcatcgtctaccag
gagcaggtcatgctcgtggcgcagatcctcgccggctacagcctgggtggcgccgacatg
ctgcggcgcgcgatgggcaagaagaagcccgaggagatggccaagcagcgggcgatcttt
ctcgaaggggccgacaagcgcggggtcgacgtcaagatcgccgagcgcctgttcgacctg
atggagaagttcgcggaatatggcttcaacaagtcgcactccgcggcctacgcgctggtc
gcctatcacacggcctggctcaaggcctattacccggccgagttcatggcggcgacgatg
tcgtcggaaatgtcggacaccgacaaggtgcggatcttctacgaagactgccgggccaac
gggctgacgatgttgccgcccgacatcaacctctccggctatcgcttcgatccggtcagc
cgaaccgagatccgctacggcctcggcgcgatcaagggcagcggcgaagccgcgatcggc
gcgatcgtcgccgagcgtggggcgaacggcccgtacaagggtcttttcgaccttgcgcgg
cgggtcgacaagcgctatctgaaccgccgcgtgctcgaggcgctggtcaaggcgggcgcg
ttcgacagcctcagcgaccaccgcgcgagcctcatggcgtcgatcggcgtcgccctcgag
accgctgaccgcgcggcccgcagcggcgggcaagtcgggctgttcggcgaagtgctcgaa
ggcggcggtgaggatctggtcgacgtgccgtactggcccgagcaggaaaagctgctgcag
gaaaagtccgcgctcggctattttttcagcgggcacccgttcaccgcctaccttgccgaa
gtgtccggtttcgccaagcggcggctcgacagcctcgaacccgcgcgcgaacccgtgatg
ctcgccggcgtcgcggtgtctttgcgcacgcagatgacgcggcgcggcaagatgctgatc
ctgctgctcgacgacgcgacagcccaggtcgaagtcgtgatcttcaatgagctctacgag
cagagccgccatctcctcaaggacgacgcgctgctcgtcatcgaaggcaaggtcagccgc
gacgactattcaggcggcgtgcgggtgacggccgagcgcatctacgatctcgccggcgcg
cgcacgcgcttcgcccaggggctccggctggtctgcaacggccagtccagcgggagagca
ctgagcgagctgctcgcgccctatgcgatggaggagggcggctgccccgtctggatcgaa
taccacaaccacaacgcgcgttgccgcgtgcgcctgggcgagcgctggcgcgtccgtctc
gacgaccgcctgatcgagtcgctcggcggctggctcaagcccgaggccgtcagcgtcatc
tactga
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