Thiobacillus denitrificans: Tbd_0896
Help
Entry
Tbd_0896 CDS
T00275
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tbd_0896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbd03019
]
Tbd_0896
03400 DNA repair and recombination proteins [BR:
tbd03400
]
Tbd_0896
Enzymes [BR:
tbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tbd_0896
Messenger RNA biogenesis [BR:
tbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tbd_0896
DNA repair and recombination proteins [BR:
tbd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Tbd_0896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AAZ96849
UniProt:
Q3SKD6
LinkDB
All DBs
Position
944968..946764
Genome browser
AA seq
598 aa
AA seq
DB search
MPETPLSLLNRVFGYPAFRGEQAAIVDTVVAGDDALVLMPTGGGKSLCYQIPALLREGCA
VVVSPLIALMQDQVAALQELGIAAAFLNSSLDGATAARVERDFVSGQLKLLYVAPERLLT
PRFQSLLAEARIALFAIDEAHCVSQWGHDFRPEYLGLSALHERFPEVPRIALTATADAAT
RAEILQRLDLGAARVFVASFDRPNIRYRIAEKTEPRRQLLDFLAEHTGEAGIVYCSTRKK
VEETADALKQAGLTALPYHGGMDNDTRRRHQEKFLREEGVVMVATLAFGMGIDKPDVRFV
AHLDLPRSVEGYYQETGRAGRDGEPAEAWMAWGLQDVVTQRRFIDEGEAGDAHKRIGHAK
LDALVGLCEAASCRRVALLSYFGEASQPCGNCDVCLNPPTLWDGTEAAQKLLSTVYRTGQ
RFGAGHVIDVLLGKTTEKIDRFGHSQLSVFGIGASQTDKVWRAVLRQLVVRGLLEVDHSA
YGALKLTQAAKPVLKGEETVMLRAIEARPARKKSRLAPSSGAGVHDDEDPLFLSLRAWRR
ETANEKGVPAYVILHDATLREIAARRPATLAELGEISGLGTKKLEAYGEDVLAVVAEG
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaacccctttaagcctcctcaaccgcgtcttcggctatcccgcgttccgtggt
gagcaggccgcgatcgtcgatacggtcgtcgccggcgacgatgcgctggtgctgatgccg
acgggcggcggcaagtcgctgtgctaccagatccccgcgctgttgcgcgaaggctgcgcg
gtcgtcgtctcgccgctgatcgcgcttatgcaggaccaggtcgcggcgctgcaggagttg
ggcatcgccgccgccttcctgaattcgagcctcgacggcgccaccgccgcgcgggtcgag
cgcgatttcgtttcggggcagttgaagctgctctacgtcgcccccgagcgcctgttgacg
ccgcgttttcagagcctgctcgccgaggcacgcatcgcgttgttcgcgatcgacgaggcg
cactgcgtgtcgcaatggggccacgacttccgcccggaatacctcggcctgtcggcgctg
cacgaacgcttccccgaggtgccgcgcatcgcgctgaccgcgacggccgacgccgcgacg
cgcgccgaaatcctgcaacgccttgatctaggcgccgcgcgcgtcttcgtcgcgagtttc
gaccgccccaacatccgctaccgtatcgccgagaaaaccgagccgcgccggcaactgctc
gacttcctcgccgaacacacaggcgaggccggcatcgtctattgcagcacgcgcaagaaa
gtcgaagaaaccgccgacgcgctgaagcaggccggcctcacggcgctgccgtatcacggc
ggcatggacaacgacacgcgtcgccgccatcaggaaaaattcctgcgcgaggagggcgtc
gtcatggtcgcgacgctcgcgttcggcatgggcatcgacaagcccgacgtgcgcttcgtc
gcccacctcgacctgccgcgctcggtcgagggctactaccaggaaaccggccgcgccggc
cgcgacggcgagccggccgaggcgtggatggcctggggcctgcaggacgtcgtcacccag
cgccgcttcatcgatgaaggcgaggccggagacgcgcacaagcgcatcggccacgccaag
ctcgacgccctggtcggcctgtgcgaagcggccagctgccgccgcgtcgcgctattgagc
tacttcggcgaagccagccagccctgcggcaactgcgacgtctgcctcaatccgcccacg
ctgtgggacggcaccgaggccgcacagaaattgttaagcaccgtctaccgcaccggccag
cgcttcggcgccgggcacgtgatcgacgtgctgctcggcaagacgaccgagaagatcgac
cgcttcggccacagccagctgagcgtgttcggcatcggcgccagccagaccgacaaggtg
tggcgcgccgtgctgcggcagctggtggtgcgcggcctgctggaggtggaccacagtgcc
tacggcgcgctcaagctcacccaagccgcgaagcccgtgctcaaaggcgaggaaaccgtg
atgctgcgcgccatcgaagcgcgcccggcgcgcaagaaatcgcgcctcgcccccagttcc
ggcgccggcgtccacgacgacgaagacccgctgttcctctccctgcgcgcctggcgccgc
gaaaccgccaacgaaaagggcgtgcccgcctacgtcatcctgcacgacgccacgctgcgc
gagatcgccgcgcgccgccccgccacgctggccgagctgggcgagatatccgggctgggg
acgaagaagctggaagcatacggcgaggacgtgttggcggtggtggcggaggggtga
DBGET
integrated database retrieval system
