KEGG   Thiobacillus denitrificans: Tbd_1005
Entry
Tbd_1005          CDS       T00275                                 
Name
(GenBank) 2',5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
tbd  Thiobacillus denitrificans
Brite
KEGG Orthology (KO) [BR:tbd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tbd03016]
    Tbd_1005
Enzymes [BR:tbd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     Tbd_1005
Transfer RNA biogenesis [BR:tbd03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    Tbd_1005
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2
Other DBs
NCBI-ProteinID: AAZ96958
UniProt: Q3SK36
LinkDB
Position
1072649..1073200
AA seq 183 aa
MADSRTPDVPSLRLFFALWPDDATRDALDRTGKWLHRHWGGRRMRAETLHITLAFLGTTP
ADRLDALIGCADGIAAEPFALVLDRPGYWRHNHVGWLGASEAPPPHLALVTALNAALQAG
GFPVDARAHVPHVTLLRNTAGGDLPLCRPVSWAVPDFVLVRSRTDPTGAQYEVIRRWLLV
HPK
NT seq 552 nt   +upstreamnt  +downstreamnt
gtggctgactcccgcacgccggacgtcccttccctccgcctgttcttcgccctgtggccg
gacgacgccacccgcgacgcgctcgaccgcaccggcaagtggctgcatcggcactggggc
gggcggcgcatgcgtgccgagaccctgcacatcacgctcgcctttctcggcacgacgccc
gccgacaggctcgacgcgcttattggctgcgccgacggcatagccgccgagcccttcgcg
cttgtgctcgaccggcccggctactggcggcataaccatgtcggctggctcggcgcgagt
gaggcgccgccgcctcatctcgcgctcgtgacggcgctcaatgccgctctccaggcgggc
ggttttccggtcgatgcacgtgcgcacgtgcctcatgtcacgctgttgcgcaacaccgcc
ggcggcgacctgcccctatgcaggccggtaagttgggcggtcccggatttcgtgctcgtg
agatcccgtaccgatcccacaggtgcgcagtacgaagtgattcgacgctggctgctggtc
catcctaaatga

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