Thiobacillus denitrificans: Tbd_1042
Help
Entry
Tbd_1042 CDS
T00275
Name
(GenBank) Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s)
Organism
tbd
Thiobacillus denitrificans
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
GAF_2
PAS_4
PAS_3
GAF
PAS_8
GAF_3
Motif
Other DBs
NCBI-ProteinID:
AAZ96995
UniProt:
Q3SK01
LinkDB
All DBs
Position
complement(1104886..1108065)
Genome browser
AA seq
1059 aa
AA seq
DB search
MLDRDDPCRVRDAGDASGRYEAHQQLALLETSVARLNDIVLITEADHGGAAGPAIVFVND
AFEHITGYRRDEVLGKSVRLLHGPLTDRAEVRRIGEALENQRPVRSELVNYSKHGEPFWL
ELDVVPVTDANGYYTHCVAVERDVTRRKEADLELARLNRALRVRSACNKALTRATDEGEL
LHEICRVAVELGGYQTAWVGFAQDAAERSIRPVACAGDGADAFNDSAATWSDEQLIGNGP
FGRALRGRQVVIVEDLRNAPDREPWAAAASARGYRSLVVLPLHDAERTYGIFALFGSDVA
RVASDEMRLLQELTDDLAFGIATLRSRCEQRRTQEAVYRIAAGVSASTGTAFFDELVRNM
TAALGAEAGFIARIRADDPGSATTVVAYVEGERIENFEYTLVGTPCEQLAKTATHVIPRR
VSELFPCTAHLSKRRAHAYVGHRLVDSRGQAIGQLFVLFSRPLHETAFITSTLQIFASRV
AAELERQSADAHIRRQASLLDKAQDAIMVRGLDDAIRYWNKGAERLYGWKADEVTGRSTE
MLLYGDPTAFRENTRKVIAHSEWNGEITQLRKDGTALVVEAHWTLLRDENDQPDAILAIN
TNVTERKAAEHKVHQLAFYDPLTGLPNRELLGDRLQHAMQVRHGQVGALLLIDLDNFKTL
NDTLGHAMGDLLLQQIAQRLQTCLRKGDTLARVGGDEFVIVLEGLSASPGDAGSLATRVG
EKILASFARPFQLADYVHHCTASIGITLFNDRPTTLDELRKRADLAMYQAKAHGRNALRF
FDPAMQAVVAARAELEVDLREALRLGAFELHYQAQVDARGCVSGAEALLRWQHPQRGWIA
PASFIPLAEETGLILPLGLWVLDVACAQLVAWSKMPHMARLSLAVNVSARQFRQADFAAQ
VLAAIERSGADPRRLKLELTESLMLDNLDDTILKMSALKAHGIGFSLDDFGTGYSSLAYL
KRLPLDEIKIDQSFVRDVLIDANDASIARSILALGQSLNLEVVAEGVETDAQHAFLAEHG
CQAYQGYLFNRPQPARQFEAWGAGHPCPDGGEETGRARL
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgatcgggacgatccctgtcgcgtgcgcgacgcgggggacgcgagcgggcgctat
gaggcgcatcagcagctcgcgctgctcgagaccagcgtcgcgcgactgaacgacatcgta
ctcatcaccgaagccgatcacgggggcgccgccgggccggcgatcgtgttcgtcaacgac
gcgttcgaacacattacgggctatcgccgcgacgaagtgctcggcaaatcggtgcgcttg
ctgcatggaccgctgaccgaccgggccgaagtgcgtcgcatcggtgaagcgctcgagaat
cagcggcctgtgcgcagcgaactcgtcaattactccaagcacggcgaacccttctggctc
gaactcgacgtcgtgccggtgaccgatgcgaacggctactacacccattgcgtggcggtc
gaacgcgacgtcacccggcgcaaggaagccgacctcgagctcgcccgcctcaaccgcgcc
ttgcgcgtgcgcagcgcctgtaataaggcgctgacccgtgcgaccgacgaaggtgaattg
ctgcatgagatctgccgcgtcgccgtcgagctgggcggctatcagacggcgtgggtagga
ttcgcgcaggatgcggccgagcggtcgatccggcccgtggcctgtgccggggacggcgcg
gacgccttcaacgacagcgcggcgacgtggtccgacgaacagctgatcggaaacggcccc
ttcggccgcgcgctgcgcggccgtcaggtcgtgatcgtcgaggatcttcgaaacgcgccg
gaccgcgagccctgggccgcggcggcttccgcgcgcggttaccgcagcctcgtcgtgctg
ccgctgcacgacgcggaacgcacctacggaatatttgcgctgttcggctcggacgtggcg
cgcgtcgcctccgacgagatgcggctgttgcaggagctgaccgacgatctggccttcggc
atcgccaccctgcgcagccgttgcgagcaacgccgcacccaggaagcggtgtacaggatc
gccgctggcgtttccgcgagcaccggcacggcctttttcgacgaactggtgcgcaacatg
accgccgccctcggcgccgaggccggcttcatcgcccgcatccgggccgacgatccggga
tctgcgacgaccgtcgtcgcctacgtcgagggcgagcggatcgagaatttcgagtacacg
ctcgtcggcacgccgtgcgaacagctcgccaaaacggcgacgcacgtcattccgaggcgg
gtgagcgagctgttcccctgcaccgcacacctcagcaaacggcgggcgcacgcctatgtc
ggacaccggctggtcgactcgcgcggacaagcgatcgggcagctcttcgtgttgttcagc
cgcccgctgcacgaaacggctttcatcacgtcgaccctgcagatcttcgcctcgcgggtt
gccgcggagctcgaacgccagagcgcagacgcgcatatccgccgtcaggcgtcactgctc
gacaaggcgcaggacgcgatcatggtgcgcggcctcgacgacgcgatccgctactggaac
aaaggcgccgagcggctgtatggctggaaagccgacgaggtcaccgggcgctcgacagaa
atgctgctgtacggcgacccgacggccttccgcgaaaacacgcggaaggtcatcgcgcac
agcgagtggaacggtgaaatcacgcagctgcgcaaggatggcaccgcgctcgtcgtcgag
gcccactggacgctgctgcgcgacgaaaacgaccagcccgacgcgatcctcgcgatcaat
accaacgtcaccgagcgcaaggccgccgagcacaaggttcatcagctcgcgttctacgac
cctctgaccgggctgccgaatcgcgagctactcggcgatcggctgcaacacgcgatgcag
gtgcgccacggccaggtgggagcgctgcttctgatcgacctcgacaacttcaagacgctc
aacgacacgctcggccacgcgatgggcgacctgctgctccagcagatcgcgcagcgcctg
cagacctgcctgcgcaaaggcgacacgctcgcacgcgtgggcggcgacgaattcgtcatc
gtgctcgaaggcctgtcggcgtcgccgggcgacgccgggtcgctggcgacccgcgtcggc
gaaaagatcctcgcaagcttcgcccgccccttccagcttgcggactatgtccaccactgc
acggcgagcatcggcatcacgctcttcaacgatcgtccgaccacgctggacgaattgcgc
aagcgcgccgatctcgcgatgtatcaggccaaggcgcatggtcgcaacgcgctgcgcttc
ttcgacccggcgatgcaggccgtggtcgccgcgcgggccgagctcgaggtggatctgcgc
gaggcgctgaggctcggcgcattcgagctgcattaccaggcccaggtcgacgcccgcggc
tgcgtatccggcgccgaagcgctgctgcgctggcagcatccgcagcgcggctggatcgcg
ccggcctccttcatcccgctggccgaggaaacgggcctgatcctgccgctcggcctgtgg
gtgctcgacgtcgcctgcgcccagctcgtcgcgtggtcgaagatgccgcacatggcccga
ctgagtctcgcggtcaacgtcagcgcgcgccagttccgtcaggccgatttcgccgcacag
gtgctcgcggcgatcgagcgctcgggggccgacccacgccggctcaagctcgaattgacc
gagagcctgatgctagacaatctcgacgacaccattctgaagatgagcgcgctcaaggcc
catggcatcggcttctcgctcgacgacttcggcacgggctattcgtcgctcgcctacctg
aagcgcctgccgctcgacgaaatcaagatcgaccagtccttcgtccgcgacgtgctgatc
gacgccaacgacgcgtcgatcgcgcgcagcattctcgcgctcggacagagcctgaatctc
gaggtggtcgccgagggggtcgagaccgacgcccagcatgccttcctcgcggaacacggc
tgccaagcctatcaaggctatctgttcaaccggccccagcccgcgcggcaattcgaagcc
tggggcgccgggcacccctgccccgacggcggggaagagacagggcgcgcgcgcctataa
DBGET
integrated database retrieval system
