KEGG   Thiobacillus denitrificans: Tbd_1533
Entry
Tbd_1533          CDS       T00275                                 
Name
(GenBank) host factor Hfq protein
  KO
K03666  host factor-I protein
Organism
tbd  Thiobacillus denitrificans
Pathway
tbd02024  Quorum sensing
tbd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tbd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tbd_1533
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Tbd_1533
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tbd03019]
    Tbd_1533
   03036 Chromosome and associated proteins [BR:tbd03036]
    Tbd_1533
Messenger RNA biogenesis [BR:tbd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Tbd_1533
Chromosome and associated proteins [BR:tbd03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Tbd_1533
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: AAZ97486
UniProt: Q3SIN9
LinkDB
Position
1618264..1618506
AA seq 80 aa
MAKEHNHLQDVFLNTLRKERIPVSVFLVNGIKLMGRIESFDQFVVLLKGQDQAAQMIFKH
AISTISPSREVVLPQRDAEA
NT seq 243 nt   +upstreamnt  +downstreamnt
atggccaaagaacacaatcatctgcaagacgtttttctcaacaccctgcgcaaggaacgc
atcccggtctcggtgttcctcgtcaacgggatcaagctgatggggcggatcgagtctttc
gatcagttcgtcgtgctgctcaagggccaggaccaggccgcacagatgattttcaagcac
gccatctcgacgatttcgccgtcgcgcgaagtcgtgctgccgcagcgcgacgccgaagcc
tga

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