Thiobacillus denitrificans: Tbd_1564
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Entry
Tbd_1564 CDS
T00275
Name
(GenBank) ribonuclease E and G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tbd_1564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbd03019
]
Tbd_1564
03009 Ribosome biogenesis [BR:
tbd03009
]
Tbd_1564
Enzymes [BR:
tbd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Tbd_1564
Messenger RNA biogenesis [BR:
tbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tbd_1564
Ribosome biogenesis [BR:
tbd03009
]
Prokaryotic type
rRNA processing factors
Tbd_1564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AAZ97517
UniProt:
Q3SIL1
LinkDB
All DBs
Position
1646206..1648827
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AA seq
873 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDY
GCERHGFLPFKEIARSCLPNGGRVPENLKEGQELLVQVEKDERGNKGAALTTYVSLAGRY
VVLMPTNPRGGGVSRRIEGEERNELRDTLAQLDIPEGMSLIARTAGIGRTAEEFQWDLNY
LLSLWKAIDGASTSMSGAFLIYQEGSLVIRAIRDYFSADIGEILIDTEDIYEQAQQFMAH
VMPANVNKVKLYRDDVPLFSRFQIEHQIESAFSRQVNLPSGGAIVIDHTEALVSIDVNSA
RATKGSDVEQTAYNTNLEAADEVARQMRLRDLGGLIVIDFIDMENPKHQREVENRLRDAL
HHDRARVQTGKISRFGLLEMSRQRLQPSLGETSYNPCPRCHGTGHIRGTESSALHILRIL
QEEAMKENTGAVHVQLPVDVATFLLNEKRPDIHTVESRLKVNVVLIPNIHMETPHYTITR
LRHDELNVAGAAEPSYKMALVPETEAIYQTAQAAAPLRQEAAVKSIPPPQPTVAPRPVVP
ASEPAPAGLFDRIFGWFKKRGDETHAPEAAPAAEAVPAIVRSERPSERRERERKPGQRRG
RGEGREGREGRNGEGRNGEARQGESRQTEPRQPEVREPRAEQAKPPRPPRQPKPRPEAEV
APRAATAPVAEEPAGEEKREPRSRRGRGRRGRGEGRSEAAANGSATPRAVIEIAGYRAVI
ELARPARPAPAAAAPVAAAAEPAAAPAPSQQALQLDAPTPATKPAPGAVTASPAEILAAL
AAGEAELQQVETRSAAAAAADGSEPSRPRRRRRPSVKADAEPVSLMQVETSAPIEVPVDA
PAPAAGPHPTRRRPRPQPSAPQEPLVQVETQAK
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgcttttcaacgcaacccaggcggaagaactccgggttgccatcgtcgac
gggcaaaagctcgtcgaccttgacatcgagtccgccagcaaggaacaacgcaagggcaac
atctacaagggtgtcgtcacccgcgtcgagcccagcctcgaggccgcgttcgtcgactat
ggctgcgagcgccacggcttcctgccgttcaaggaaatcgcccgctcgtgtctgcccaat
ggcggccgcgtccccgagaacctcaaggaaggccaggaactgctggtccaggtcgagaag
gacgagcgcggcaacaagggcgcagcactgaccacctacgtctcgctcgccggccgctac
gtcgtgctgatgccgaccaacccgcgcggcggaggcgtctcgcgccgcatcgaaggcgaa
gagcgcaacgaactgcgcgacacgctggcgcagctcgacatccccgaaggcatgagcctg
atcgcgcgcaccgccggcatcggtcggactgccgaagaattccagtgggacctgaactat
ctcctgagcctgtggaaggcgatcgacggcgcctcgacgtcgatgtcgggcgccttcctg
atctaccaggaaggcagcctcgtgatccgcgcgatccgcgactacttctcggccgacatc
ggcgaaatcctgatcgacaccgaagacatctacgagcaggcgcagcagttcatggcgcac
gtgatgccggccaacgtcaacaaggtcaagctctaccgcgacgacgtgccgctgttctcg
cgcttccagatcgagcaccagatcgagtcggcgttctcgcgccaggtcaacctgccgtcg
ggcggcgcgatcgtcatcgaccataccgaggcgttggtgtcgatcgacgtcaactcggcg
cgcgcgaccaagggcagcgacgtcgagcagaccgcttacaacaccaacctcgaagcggcc
gacgaagtggcccgccagatgcgtctgcgcgatctcggtggcctgatcgtgatcgatttc
atcgacatggagaaccccaagcatcaacgcgaggtcgagaaccgcctgcgcgatgcgctc
catcacgaccgcgcgcgcgtgcagaccggcaagatctcgcgcttcggcctgctcgaaatg
tcgcgccagcggctgcagccctcgctcggcgagaccagctacaacccctgcccgcgctgc
cacggcaccggccacatccgcggcaccgagtcgtcggctttgcacatcctgcgcatcctg
caggaagaggcgatgaaggagaacaccggcgccgtgcacgtccagctgccggtcgacgtc
gcgactttcctgctgaacgaaaaacggcccgacatccacacggtcgagtcgcgcctcaag
gtcaacgtggtgttgatccccaacatccacatggagaccccgcactacacaatcacgcgt
ctgcgccacgacgaactgaacgtcgccggcgcggccgagccgagctacaagatggcgctg
gtgccggaaaccgaagcgatctaccagaccgcccaggccgccgcacctttacgccaggaa
gccgcggtcaagtcgattccgccgccgcaaccgaccgtcgcgccgcgccccgtcgtgccg
gcgagcgagcccgcgcccgcgggcctcttcgaccgcatcttcggctggttcaagaaacgc
ggcgacgagacgcacgcgccagaagcggcgcccgcggcagaagcggtgcccgcgatcgtg
cgcagtgaacgtccgagcgagcgccgcgagcgtgaacgcaagccggggcagcgccgcggt
cgcggtgaaggccgcgaagggcgcgagggtcggaacggcgagggccgcaatggcgaagca
cgccaaggcgagtcgcgccaaaccgagccgcgccagcccgaagtgcgcgagccgcgcgcc
gagcaggcgaaaccgccgcgcccgccgcgtcaacccaagcctcgccccgaggcggaagtt
gccccccgcgccgcgactgcgcccgttgccgaggaacccgccggcgaggaaaagcgcgag
ccgcgcagccgtcgtggccgcggtcgtcgcggtcgtggcgaaggccgcagcgaagcagcg
gcgaacggcagcgcgaccccgcgcgccgtgatcgaaatcgccggctatcgggcggtcatc
gaacttgcgcggcccgcccgcccggcgccggccgcggcagccccggttgcagccgcggcc
gagcctgccgcggcgccggctccgtcgcagcaggccctgcaactcgatgcgcctaccccg
gccaccaaaccggccccgggtgcggtgactgcatcgcccgcggaaattctcgccgcgctc
gcagccggcgaagccgaactgcaacaggtcgagacccgctcggcggccgccgctgcggcg
gatggaagcgagccgagccggccccgtcggcgtcgccgtccgtcggtcaaggccgacgcc
gagccggtgagcctgatgcaggtcgagaccagcgcgccgatcgaagtcccggtggacgct
cctgcgccggccgcggggcctcacccgacgcgtcgccgcccgcgcccgcagccgagcgca
ccgcaggaaccgctggtgcaggtcgaaacgcaggcgaagtaa
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