Thiobacillus denitrificans: Tbd_1568
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Entry
Tbd_1568 CDS
T00275
Name
(GenBank) Excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tbd_1568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbd03400
]
Tbd_1568
DNA repair and recombination proteins [BR:
tbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tbd_1568
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Tbd_1568
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
UVR
ResIII
DEAD
AAA_30
Kinesin
AAA_22
EAD9
FlaG
Microtub_bd
HH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
AAZ97521
UniProt:
Q3SIK7
LinkDB
All DBs
Position
complement(1650662..1652689)
Genome browser
AA seq
675 aa
AA seq
DB search
MFVTFPDSPFRLFQPFPPAGDQPTAIARLIEGIDDGLSYQTLLGVTGSGKTYTMANVIAR
AGRPALIMAPNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPARDLFIEKDSSI
NEHIEQMRLSATKSLLERRDTVIVCTVSAIYGIGDPSDYHSMILLLRQNDKMTQREVIAR
LTQMQYDRNDVDFKRGVFRVRGDVIDIFPAEHAETAIRVELFDDVVETLHLFDPLTGQIL
QKVSRFTVFPSSHYVTPRETTLRAIEAIKVELRERLDWYYANNKLVEAQRLEQRTRFDLE
MMVELGFCKGIENYSRHLSGRKAGEPPPTLIDYLAKDALMFIDESHVTVTQVGGMYKGDR
SRKENLVDYGFRLPSALDNRPLKFEEFEALMPQTVFVSATPAKYEAEHAGQVVEQLVRPT
GLIDPIVEVRPVTTQVDDLMSEVKKRVAVGERVLVTTLTKRMAEDLTDYLAEHGVKVRYL
HSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI
QTIGRAARHLNGTAILYADRITDSMQRAIGETERRRAKQIAFNTEHGITPRGVVKRIKDI
IDGVYDADASRQELKAAQTAAEYKVMDEKSLTKRVKKIEKEMQDAAKNLEFEKAAVLRDQ
LKELKALLFGVEERE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtcacctttcccgatagcccgttccgtctttttcagccctttcccccggccggc
gaccagccgacggcgatcgcccggttgatcgaggggatcgacgacggcctgtcgtaccag
accctgctcggggtgaccggttccggcaagacctacaccatggcgaacgtgatcgcgcgc
gcggggcggccggccctgatcatggcgcccaacaagacgctcgccgcgcagctttacgcc
gagatgcgcgagttctttccggagaacgcggtcgagtacttcgtctcctactacgactac
taccagcccgaggcctacgtcccggcgcgcgatctcttcatcgaaaaggactcgagcatc
aacgagcacatcgagcagatgcggctctcggcgaccaaatcgctgctcgagcggcgcgac
acggtcatcgtctgcaccgtgtcggcgatctacggtatcggcgacccgtccgactaccac
agcatgatcctgctcctgcggcagaacgacaaaatgacgcagcgcgaggtcatcgcgcgc
ctgacgcagatgcagtacgaccgcaacgacgtcgacttcaagcgcggcgtctttcgcgtg
cgcggcgacgtgatcgacatcttcccggccgaacacgccgagaccgcgatccgcgtcgag
ctcttcgacgacgtggtcgagacgctgcatctcttcgatccactgaccggccagatcctg
cagaaggtctcgcgcttcacggtcttcccgtcgagccactacgtcacgccgcgtgagacg
acgctgcgcgcgatcgaggcgatcaaggtcgagctgcgcgagcgccttgactggtattac
gccaacaacaagctcgtcgaggcgcaaaggctcgagcagcgcacgcgtttcgacctcgag
atgatggtcgaactcggcttctgcaagggcatcgagaactactcgcggcatctgtcgggc
cgcaaggccggcgagccgccgccgaccctgatcgactatctggcgaaggacgcgctgatg
ttcatcgacgagtcgcacgtcaccgtgacccaggtcggcggcatgtacaaaggcgaccgc
tcgcgcaaggaaaacctcgtcgactacggtttccggttgccctcagcgctcgacaaccgg
ccgctgaaattcgaggaattcgaggcgctgatgccgcagaccgtgttcgtctcggcgacg
ccggcgaagtacgaagccgaacacgcggggcaggtcgtcgaacagctcgtgcgcccgacc
gggttgatcgaccccatcgtcgaggtgcggccggtcacgacccaggtcgacgacctcatg
agcgaggtcaagaaacgcgtggccgtgggcgagcgcgtcctcgtcacgacgctgaccaag
cgcatggccgaggacctgaccgactacctcgccgagcacggcgtcaaggtgcgctacctg
cactccgacatcgacacggttgagcgcgtcgagatcatccgcgacctgcggctcggcgag
ttcgacgtgctggtcggcatcaacctgctgcgcgagggcctcgacatccccgaggtgtcg
ctggtcgcgattctggatgccgacaaggagggcttcctgcgctccgagcgctcgctgatc
cagaccatcggccgcgccgcgcgccatctgaacggcacggcgatcctctacgccgaccgg
atcaccgattcgatgcagcgcgcgatcggcgagaccgagcgccggcgcgccaagcagatc
gcgttcaataccgaacacggcatcaccccgcgcggcgtcgtcaagcgcatcaaggacatc
atcgacggcgtctacgatgccgacgccagccgccaggaactcaaggccgcgcagaccgcc
gcggaatacaaggtcatggacgagaaatccctgaccaagcgagtcaagaagatagagaag
gaaatgcaggacgcggcgaagaacctcgagttcgaaaaggccgcggtgctgcgggatcag
ttgaaggagctgaaggcgttgctgttcggggtggaggagcgggagtag
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integrated database retrieval system
