Thiobacillus denitrificans: Tbd_1733
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Entry
Tbd_1733 CDS
T00275
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tbd_1733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbd03019
]
Tbd_1733
Enzymes [BR:
tbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tbd_1733
Messenger RNA biogenesis [BR:
tbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tbd_1733
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
HEM4
DUF8086
ERCC3_RAD25_C
P-loop_SecA
Sacchrp_dh_NADP
AAA_22
DegT_DnrJ_EryC1
DUF2529
Motif
Other DBs
NCBI-ProteinID:
AAZ97686
UniProt:
Q3SI47
LinkDB
All DBs
Position
complement(1817343..1818776)
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AA seq
477 aa
AA seq
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MTVETTFASLALAEPILRAIADAGYTAPTPIQAQAIPHVLAGGDLLAAAQTGTGKTAGFT
LPILHQLSTRAAVAPKPGRPRCLILVPTRELAAQVEESVKTYGKYLSLTSMVMFGGVNIN
PQFKALKARVDILVATPGRLLDHVAQKTVDLSGVEILVLDEADRMLDMGFIRDIRRVLAV
LPKQRQNLLFSATFSDEIRTLANGLLNNPKSVEVARRNTTAEVVEQSMHRVPQAHKRDLL
AHLIKHHDWQQVLVFTRTKHGANKLAEKLNKDGITAAAIHGNKSQSARTKALASFKDGSV
RALVATDIAARGIDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGSALSLVDDEEMGY
LRDIEKLIKRAIVRVEIEPGFVPPAKADLMSDERPPRPPQGRGASRAGQNGGPRQGQGGR
GGQGSGRNANRPAQGKSAAAPVKPASGRAAAPNSPAQPRKPRPQAALFSAKPGSRGH
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgactgttgaaaccacctttgccagcctcgcgctggccgaacccattctgcgcgcgatc
gccgacgccggctacacggcgcccacgccgatccaggctcaggcgattccgcacgtgctc
gccggcggcgatctgctcgccgcggcgcagaccggcaccggtaagacggcgggcttcacg
ctgccgatcctgcatcagctatcgacccgcgcggcggtcgcgccgaagcccggccggccg
cgctgcctgatcctggtgccgacgcgcgaactcgcggcgcaggtcgaggaatcggtcaag
acctacggcaaatacctctcgctgacgtcgatggtcatgttcggcggcgtcaacatcaac
ccgcagttcaaggcgctgaaggcgcgcgtcgacatcctcgtcgcaacgccgggccgcctg
ctcgatcatgtcgcgcaaaaaaccgtggacctgtccggggtcgaaatcctcgtactcgac
gaggccgaccgcatgctcgacatgggcttcatccgcgacatcaggcgggtgctcgccgtg
ctgccgaaacagcgccagaacctgctgttctcggcgactttctccgacgagatccgcacg
ctcgcgaacggcctgctgaacaatccgaagagcgtcgaagtcgcacgccgcaacacgacg
gccgaggtcgtcgagcaatcgatgcaccgcgtgccgcaggcgcacaagcgcgacctgctc
gcgcatctgatcaagcaccacgactggcagcaggtgctggtcttcacgcgcaccaagcac
ggcgccaacaagctcgccgagaagctcaacaaggatggcatcaccgcagcggccatccac
ggcaacaagagccagtccgcgcgcaccaaggcgctcgcgagtttcaaggacggcagcgtg
cgggcgctcgtggcgaccgatatcgccgcgcgcggcatcgacatcgaccagttgccgcag
gtcgtcaacttcgaactgcccaacgtccccgaggactacgttcaccgcatcggccgcacc
ggccgggccggcgcgacgggttccgcgctctcgctcgtcgacgacgaggaaatgggctat
ctgcgcgacatcgagaagctcatcaagcgcgcgatcgtgcgcgtcgagatcgagccgggc
ttcgtgccgccggccaaggcagacctgatgtccgacgagcgtccgccacgtccgccgcag
gggcgcggcgcatcgcgcgccggccagaacggcgggccgcgccagggccagggcgggcgc
ggcgggcaaggtagcggacgcaatgcgaaccggccggcccaggggaaatcggccgcggcg
cccgtcaagcctgcgagcggccgtgcggccgcgccgaattcgccggcccagccgcgcaag
ccgcggccgcaggcggcgctgttctcggccaagcccggttcgcgcgggcactga
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