Thiobacillus denitrificans: Tbd_2008
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Entry
Tbd_2008 CDS
T00275
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tbd
Thiobacillus denitrificans
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbd03019
]
Tbd_2008
Enzymes [BR:
tbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Tbd_2008
Messenger RNA biogenesis [BR:
tbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Tbd_2008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AAZ97961
UniProt:
Q3SHC5
LinkDB
All DBs
Position
complement(2094965..2098792)
Genome browser
AA seq
1275 aa
AA seq
DB search
MTSSISATNKPAGTSPGLRITYPDLPVAARRDDILAALERHRVLILCGETGSGKTTQIPK
MCLEAGIPPGKLIGCTQPRRIAARSVAARIAQELGSELGGLVGYKVRFSDKVRPDTAIKV
MTDGILLAESQGDPLLSRYDTIILDEAHERSLNIDFLLGYLKTLLDKRADLRVLVTSATI
DAERFSKHFDDAPVIEVSGRLYPVEIRWRPIARDDEAGAPGNKREAEKPGRTYKDGPDQI
AAILDATDELARLGPGDILVFLPGEREIRDTAEALRKHHPPGTEILPLFSRLSVAEQDAI
FKPTSALRRIVLATNVAETSLTVPGIRYVIDPGTARVKRYSARNKVEQLLIEKVSQASAN
QRAGRCGRVADGVCIRLYDEADFSNRPRFTDPELLRSSLAGVILRMKSLGLGDVVGFPFI
DPPSSRLVTDGYQLLGELHALDEQGQLTKIGRQLAKLPLDPRIARMLLAAEQQRCVREIL
IIASALSVQDPRDRPMERAQAADEKHKLFQDERSDFMGWLRLWRWYEEQVQHKKTNRQLQ
TLLQDHFLSPRRMREWRDIHGQLHAQVAELGLRENEKDAGYDAIHQALLSGLLGNIGFKS
DDGRAKTGAGRPKPGEGNYLGARGIKLSIHPGSALAKKGPKWIMAAELTDTGRLLARTVA
EVRPEWIEGAGRHLLTRMYIEPHWEKDGARVVAWERVSLYGITLVPRRKIHYGPIDPELA
RELFIRGALVAGDYDTRAPWFAHNRALIQEIEDLEHKARKSGVWLDEARIYGIFDARVPA
GIHNGVAFEKWRAEAEAADPRTLFLRREDILGEGLGADHTLFPESMQVDGVMCALKYRFE
PGHPLDGVTLRVPLYLLNRIEAPQIDWLVPGLIREKLTALLKFLPKDKRRPLIPLPDTVT
AFLSSAQPGERVLTEALAAFVRKKTGADIHPDDWRGELPAHLKMNLCVVDDSGQELASGR
DLGALRQQLGGAARITYGGGAADSEFERTGLLEWDFGDLPEQVKFKRGGRELTGYPALVD
TGTSVDLRLIDTAEAARGETRRGVIRLLRLALAAQFKQLDKDLGRETALALKFRTLGSPE
TLRAHLLDAIAARALLGDDETPRDAKAFARQKERAKPRVAVVKQALLRDVAEILDLHAQV
AARLAAKPQFTAVMRDETAHLAALVPSDFITATPWPRLKDLPRYLRGILKRLEKLPAAEQ
RDARAMAGVLTLQNKYQARRAQVRGELPAALDDFRWQLEELRVSLFAQELKTPYPVSVKR
LDKVWDTLARQPLDQ
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgacctcaagtatctccgcgacaaataaacccgccggcacgtcgcccggcctgcggatc
acctaccctgacctgcccgtcgccgcgcggcgcgacgacatcctcgccgcgctcgagcgc
caccgcgtgctgatcctctgcggcgaaaccggctcgggcaagacgacgcagattcccaag
atgtgcctcgaggcgggtattccgcccggcaagctgatcggctgcacccagccgcggcgc
atcgccgcgcgctcggtcgcggcgcgcatcgcccaggaactcggcagcgaactcggcggg
ctggtcggctacaaggtgcgtttcagcgacaaggtgcgtccggataccgcaatcaaggtc
atgaccgacggcatcctgctcgcggaaagccagggcgacccactgctctcgcgctacgac
acgatcatcctcgacgaggcgcacgagcgcagcctcaacatcgactttctgctcggctac
ctcaagaccctgctcgacaagcgcgccgatctgcgcgtactcgtcacctcggcgacgatc
gacgccgaacgcttctcgaagcacttcgacgacgcgcctgtgatcgaagtgtcgggacgg
ctctatccggtcgaaatccgctggcgtccgatcgcgcgcgacgacgaggcgggcgcgccc
gggaacaagcgcgaggcggaaaagcccggccggacgtacaaggacggccccgaccagatc
gccgccatcctcgacgcgaccgacgaactggcgcggctcgggcccggcgacatcctcgtt
ttcctgccgggtgagcgcgaaatccgcgacaccgccgaggcgctgcgtaagcatcacccg
cccggaaccgaaatcctgccgctgttctcgcgcctgtcggtcgccgaacaggacgcgatc
ttcaagccgacgtcggcgctgcggcgcatcgtgctcgcgaccaacgtcgccgaaacctcg
ctgaccgttcccggcatccgctatgtgatcgaccccggcacggcgcgagtcaagcgctat
tcggcgcgcaacaaggtcgagcagctattgatcgagaaggtgtcgcaggcgtcggccaac
cagcgcgcgggacgctgcggccgcgtcgccgacggggtgtgcatccggctttacgacgag
gcggatttttctaaccggccacgcttcaccgaccccgaactgctgcgttcctcgctcgcc
ggcgtcatcctgcgcatgaagtcgctcggcctcggcgacgtcgtcggctttcccttcatc
gacccgccgagcagccggctcgtgaccgacggctatcaattgctcggcgagcttcacgca
ctcgacgagcaggggcaattgacgaagatcggccggcagctcgcgaagctgccgctcgac
ccgcgcatcgcgcgcatgctgctggccgccgagcagcagcgctgcgtgcgcgaaatcctg
atcatcgcgagcgcgctctcggtgcaggacccgcgcgaccgcccgatggagcgcgcgcag
gcggccgacgagaagcacaagcttttccaggacgagcgttccgacttcatgggctggctc
aggctgtggcgctggtacgaggagcaggtgcagcacaagaagaccaaccgccagctgcag
acgctgttgcaggatcatttcctgtcgccacggcgcatgcgtgagtggcgcgacatccat
gggcagttgcacgcgcaggtcgccgagctggggctgcgcgagaacgagaaggacgccggc
tacgacgcgatccatcaggcgctgctgagcggcctgctcggcaatatcggtttcaaatcc
gacgacggccgcgcaaagaccggcgcggggcggccgaagcccggtgaaggcaactacctg
ggcgcccgcggcatcaagctctcgatccaccccggctcggcgctggcgaagaagggcccg
aaatggatcatggccgccgagctcaccgacaccggccgcctgctcgcgcgcaccgtcgcc
gaggtccgtcccgagtggatcgagggcgcgggccgccacctgctcacgcgcatgtacatc
gagccgcactgggagaaggacggcgcgcgcgtcgtcgcctgggagcgcgtgagcctctac
ggcatcacgctcgtgccgcggcgcaagatccactacggcccgatcgatcccgagcttgcg
cgtgaactcttcatccgcggtgcgcttgtcgccggcgattacgacacgcgcgcgccgtgg
ttcgcacacaaccgcgcgctgatccaggaaatcgaggacctcgagcacaaggccagaaaa
tccggtgtctggctcgacgaggcccgcatttacggcatcttcgacgcgcgcgttccggcc
ggcatccacaatggcgtggcgttcgagaagtggcgggccgaggcggaggccgccgacccc
cgcaccctgtttctgcgccgcgaggacatcctcggcgaggggctcggcgccgatcacacg
ctcttcccggagtcgatgcaggtcgatggcgtgatgtgcgcgctcaaataccgcttcgag
ccgggtcacccgctcgacggcgtcacgctgcgcgtgccgctgtatctgctcaaccggatc
gaagcgccgcagatcgactggctcgttcccggcctgatccgcgagaaattgaccgcgctg
ctcaagttcctgcccaaggacaagcgccggccgctgattccactgcccgatacggtcacg
gcgtttctgtcgagcgcgcagcccggcgagcgggtgctgaccgaggcgctggccgccttc
gttcgcaaaaaaaccggcgccgacatccatcccgacgactggcgcggcgaattgcccgcc
cacctcaaaatgaacctctgcgtcgtcgacgacagcggacaggaactcgcgagcggccgc
gaccttggcgcgctgcgtcagcagctcggcggcgctgcgcgcatcacctacgggggcggg
gccgccgacagcgagttcgagcgtaccgggctgctcgaatgggatttcggcgacctgccg
gagcaagtcaaattcaagcgcggcggccgcgagctgaccggctatcccgcgctcgtcgac
accggcacgagcgtcgacctgcgtctcatcgacacggccgaggcggcgcggggcgagacg
cgacgcggcgtgatccgcctgctgcgactcgcgctcgccgcgcagttcaagcagctcgac
aaggaccttgggcgcgagacggcgctcgcgttgaaattccgcacgctcggcagtcccgaa
accctgcgcgcgcacttgctcgacgcgatcgccgcccgcgcgctgctcggcgacgacgag
acgccgcgcgacgcaaaggctttcgccaggcagaaggagcgcgccaagccgcgtgtcgcc
gtcgtgaagcaggccctactgcgcgacgtcgcggagatcctcgacctgcacgcgcaggtg
gcggcgcgcctcgcggccaagccgcagttcacggcggtgatgcgcgatgagacggcccac
ctcgcggcgctggttccgtccgatttcatcaccgccacgccgtggccgcggctgaaagac
ctgccgcggtacctgcgcggcatcctcaagcgcttggagaagctgccggcggccgagcag
cgcgacgcgcgcgccatggccggcgtgctgacgctgcagaataaatatcaggcacgacgg
gcgcaggtacgcggcgagcttcccgccgcgctcgacgatttccgctggcaactcgaggaa
ctgcgggtctcgctgttcgcgcaggagctgaagacgccgtacccggtctcggtcaagcgg
ctcgacaaggtctgggacacgcttgccaggcagccgctcgatcagtag
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integrated database retrieval system
