Thiobacillus denitrificans: Tbd_2449
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Entry
Tbd_2449 CDS
T00275
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03420
Nucleotide excision repair
tbd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tbd_2449
03430 Mismatch repair
Tbd_2449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbd03400
]
Tbd_2449
Enzymes [BR:
tbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tbd_2449
DNA repair and recombination proteins [BR:
tbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tbd_2449
MMR (mismatch excision repair)
Other MMR factors
Tbd_2449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_12
Viral_helicase1
PcrA_UvrD_tudor
DUF2683
Motif
Other DBs
NCBI-ProteinID:
AAZ98402
UniProt:
Q3SG54
LinkDB
All DBs
Position
2518254..2520434
Genome browser
AA seq
726 aa
AA seq
DB search
MSSSPDGHQRLLDSLNPEQRAAVTLPHESALILAGAGSGKTRVLTTRIVWLVQTGQVSPH
GILAVTFTNKAAKEMLTRISAMLPINTRGMWVGTFHGLANRLLRTHWREAGLPQSFQILD
ASDQLSAIKRLMKAMNVDTEKYEPKKVQWFINGHKEAGRRARDAEAYDEYSMRLAEIYEA
YDAQCQREGVADFPELLLRSYELLYRNEPLRQHYQDRFRHILVDEFQDTNTLQYRWLKLF
AGAHSVIFAVGDDDQSIYAFRGADTANMAAFEREFAHGNVIKLEQNYRSHGNILTAANTL
IAQNAHRLGKNLWTAAGEGEPIRVFEAYSDQDEASFVVDEVRNLNREGIAYADMALLYRS
NAQSRVLEHALFSAGVAYRVYGGLRFFERQEVKHALAYLRLLTHPEDDGAFLRVVNFPTR
GIGARTLEQLSETAARAGTSLWQAACTSGGKVAAFARLIEDIKRATADLPLPEAIGHVVE
ASGLADYYRADKDGADRLENLNELVNAAALFAEESAAEASASDEPAPSELDRFLAHAALE
AGEHQAEAGRDALQLMTVHAAKGLEFEAVFITGLEESLFPHEQSTLQGSGTHADEGLEEE
RRLMYVAITRARRRLYLSHAQSRMLHGQVRYGIASRFLSELPEQVLLHLNRRATPAHVRE
APAPSPRAARAGEDTGYRVGQSVAHARFGTGIIIDFEGRGPDARVQVKFRDGTKWLALAY
AKLSPA
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctcccccgacgggcaccagcgcctgctggattcgctcaatcccgaacagcgc
gccgcggtgacgctgccgcacgagtccgcgctgatcctcgccggggccggctcgggcaag
acgcgcgtgctgaccacgcgcatcgtctggctcgtccagaccggccaggtgtcgccgcac
ggcatcctcgccgtgaccttcaccaacaaggcggcgaaggagatgctcacgcgcatttcg
gcgatgctgccgatcaacacacgcggcatgtgggtcggcaccttccacggcctcgccaat
cgcctgttgcgcacgcactggcgagaagccggattgccgcagtccttccagatcctcgac
gcctccgaccagctctcggcgatcaagcggctcatgaaggcgatgaacgtcgacaccgag
aaatacgagccgaagaaggtgcagtggttcatcaacggccacaaggaggccggacgccgc
gcgcgcgacgccgaggcctacgacgagtactcgatgcggctggccgagatctacgaagcc
tacgacgcgcagtgccagcgcgagggcgtggccgacttccccgaactgctgctgcgctcc
tacgaattgctctaccgcaacgagccgctcaggcagcattaccaggatcgcttccggcac
atcctggtcgacgagttccaggacaccaacacgctgcaataccgctggctcaagctcttc
gccggcgcgcacagcgtgatcttcgcggtcggcgacgacgaccagtcgatctacgccttc
cgcggcgccgacaccgccaacatggccgcgttcgaacgcgaattcgcgcacggcaacgtg
atcaagctcgagcagaactaccgcagccacggcaacatcctgaccgccgcgaacacgctg
atcgcgcagaatgcccaccgcctcggcaagaacctgtggaccgccgcgggcgaaggtgag
ccgatccgcgtcttcgaggcgtattccgaccaggacgaggcgagtttcgtcgtcgacgag
gtgcggaatctgaaccgggaaggcatcgcctacgccgacatggcgctgctttaccgctcc
aacgcgcagtcgcgcgtgctcgaacacgccctgttctcggccggcgtcgcctatcgcgta
tacggcggcctgcgcttcttcgagcgccaggaagtcaagcacgccctcgcctacctgcgt
cttctgacccaccccgaggacgacggcgccttcctgcgcgtggtcaacttccccacccgc
ggcatcggcgcgcgcacgctcgagcaattgtccgagaccgccgcgcgcgcgggaacgagc
ctctggcaggccgcctgcaccagcggcggcaaggtcgcggcgttcgcgcggctgatcgag
gacatcaagcgcgccacggccgacctgcccttgcccgaagcgatcggccacgtcgtcgag
gcgtcgggcctggccgattactaccgtgccgacaaggacggcgccgaccgcctggagaac
ctcaacgaactcgtcaacgcggccgcgcttttcgccgaggagtcggctgccgaggcttcg
gcgtccgacgagccggcgccgtccgaactggaccgttttctcgcccatgccgcgctcgag
gccggcgagcaccaggccgaggcggggcgcgacgcgctgcagttgatgaccgtgcacgcg
gcgaagggcctcgagttcgaggcggttttcatcaccgggctcgaggaaagcctgtttccg
cacgagcaaagcacgctccagggcagcgggacacacgccgacgaggggctcgaggaagag
cggcggctgatgtacgtcgcgatcacgcgggcgcggcgcaggttgtatctctcgcacgcg
caatcgcgcatgctgcacggccaggtgcgctacggcatcgcctcgcgttttctgtccgaa
ctgcccgagcaggtgctactgcacctcaatcgccgggcgacgccggcgcatgtgcgcgaa
gcgccggcgccatcgccgcgggccgcgcgcgccggcgaagacacggggtatcgcgtcggt
cagagcgtcgcgcacgccaggttcggcaccggcatcatcatcgacttcgaaggacgcggg
cccgacgcgcgcgtgcaggtcaagttccgtgatggaacgaagtggcttgcgctcgcctac
gccaagctgtcgccggcctga
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