Thiobacillus denitrificans: Tbd_2453
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Entry
Tbd_2453 CDS
T00275
Name
(GenBank) DNA polymerase A
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tbd
Thiobacillus denitrificans
Pathway
tbd03030
DNA replication
tbd03410
Base excision repair
tbd03420
Nucleotide excision repair
tbd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tbd_2453
03410 Base excision repair
Tbd_2453
03420 Nucleotide excision repair
Tbd_2453
03440 Homologous recombination
Tbd_2453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tbd03032
]
Tbd_2453
03400 DNA repair and recombination proteins [BR:
tbd03400
]
Tbd_2453
Enzymes [BR:
tbd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Tbd_2453
DNA replication proteins [BR:
tbd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Tbd_2453
DNA repair and recombination proteins [BR:
tbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Tbd_2453
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tbd_2453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AAZ98406
UniProt:
Q3SG50
LinkDB
All DBs
Position
2522451..2525174
Genome browser
AA seq
907 aa
AA seq
DB search
MNDPSVSQPGKTLLLVDGSSYLYRAFHALPDLRNAAGEPTSAIKGVLAMLHRLRKDYAAD
YIACVFDAKGKTFRDDLYPAYKANRPAMPDDLRSQIEPLHEAIRAEGWPLVVIDGVEADD
VIGTLVRHAAQKGIRSIVSTGDKDMAQLVDGHVTLVNTMSLETLDEAGVVAKFGVAPDRI
IDYLTLVGDAVDNVPGVAKCGPKTAAKWLAEYGTLDNLLAHADAVKGAVGENLRAVVDWL
PQARALLTIKTDVALPFDFDDLVLKPRDIDALRGLFERYEFRTWLRELDASPATAVSSEP
DCSGSHRAGYEIILSEAQLDAWVARVATADAFALDVEASSASPLQCELIGLAFAVCEGEA
AYLPLGHHYAGAPAQLSRAAAFARIKPLLEERAAKIVGQNLKYARHVLANCGIALGGAAD
DTLLQSYVLEAHQPHELASLANRHLGLATLACDELTGKGAARIGFDQVAVERAGEYAAEQ
ADVTLRVRGQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGR
KMLELEQRAFQEAGQPFNLGSPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDH
PIARAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATAVTGRLASVEPNLQNIPA
RTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLLHAFANDLDIHTATAAEV
FGVPLDAVSAEQRRIAKVINFGLIYGMSAFGLASQLNLERSAAQAWIDRYFTRYPGVANY
MLRTRESARAQGYVETVFGRRLYLPEINARNPQRRQGAERAAINAPMQGTAADLIKLAMI
AVQRWIDSERLGTRLLLQVHDELILEVPEHELERVRAELPSHMCDVAALKVPLRVGVGVG
GNWEAAH
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgatcctagtgtaagtcagcccggcaagaccctgttgttggtggacggctcgtcc
tatctgtaccgcgcctttcatgcgctgccggacctgcgcaacgcggcgggcgaaccgacc
agtgcgatcaagggcgttctcgccatgctgcacaggctgcgcaaggattacgcggccgat
tatatcgcctgcgtgttcgacgcgaagggcaagaccttccgcgacgatctctatcctgcg
tacaaggcgaaccgcccggcgatgccggacgatctgcgcagccagatcgaacctctgcac
gaggccatccgcgccgagggctggccgctcgtcgtcatcgacggcgtcgaggcggacgac
gtgatcggcacactcgtgcgccacgccgcacaaaaaggcatccgcagcatcgtctcgacc
ggcgacaaggacatggcccagctcgtcgacggccacgtcacgctcgtcaacaccatgagc
ctcgagacgctcgacgaagccggcgtcgtcgccaagttcggcgtggcgcccgaccgcatc
atcgactacctcacgctcgtcggcgacgcggtcgacaacgtgcccggggtcgccaaatgc
gggccgaagaccgccgcgaaatggctcgccgaatacggcacgctcgacaacctgctcgcc
cacgccgacgcggtcaaaggcgcggtcggagagaacctgcgcgcggtcgtcgactggctg
ccgcaggcccgcgcgctgctcacgatcaagaccgacgtcgcgctgcccttcgatttcgac
gacctcgtgctgaagccgcgcgacatcgacgccctgcgcgggctgttcgagcgctacgaa
ttccgtacctggctgcgcgaactcgacgcctcgccggcgacggccgtttcgtccgaaccc
gactgcagcggatcgcaccgcgccggctacgagatcatcctgagcgaagcgcagctcgac
gcctgggtcgcgcgggtcgcgaccgccgacgccttcgcgctcgacgtcgaggcgagcagc
gcgagcccgctgcagtgcgaactgatcggcctggcgttcgcggtctgcgaaggcgaggct
gcgtatctgccgctcggccaccattacgccggcgcgccggcgcagctctcgcgcgccgcg
gctttcgccagaatcaagcccctgctcgaggagcgcgcggcgaaaatcgtcggccagaat
ctcaaatacgcgcgccacgtgctcgccaactgcggcatcgcgctcggcggcgcggccgac
gacacgctgctgcaatcctacgtgctcgaagcgcatcagccgcacgaactcgcgagcctc
gccaatcgccatctcgggctcgcgacgctcgcctgcgacgaactcaccggcaagggcgcg
gcgcgcatcggcttcgatcaggtcgcggtcgagcgcgccggcgaatacgcggccgagcag
gcggacgtcacgctgcgcgtccgcggccagctcgcagcgcgcatcgcggcgtcggagaaa
ctcgaatacgtctaccgcgaaatcgagctcccggtttccgaagtgctcttccgcatggaa
cgcgcgggcgtgctgctcgatcgcgcgctcctcgcggcgcaaagcggcgagctcggccgc
aagatgctcgaactcgagcaacgcgccttccaggaagcgggccagcctttcaatctcggc
tcgcccaagcagatcggcgacattctgttcgcgcaaaaaggccttccgatcctcaagaaa
acaccgggaggggcgccgtcgaccgacgaggaaacgctcgaactgctcgcactcgaccac
ccgatcgcgcgtgcgatcctcgactaccgcggactcgccaaactgaagtcgacctacacc
gacaagctgccgcagatggtgcatccgttgaccggccggctgcacacaagctattcgcag
gcgaccgcggtgaccggccggctcgcgagcgtggagccgaacctgcagaacatcccggcg
cggacggcggaagggcgccgcatccgtgaggccttcatcgcgccgcccggccacctgctc
gtctcggccgactattcgcagatcgagctcaggatcatggcgcatctatcggacgacgcc
ggcctgcttcacgccttcgccaacgatctcgacatccacaccgcgaccgccgccgaggtg
ttcggcgtcccgctcgacgcggtcagcgccgagcagcgccggatcgccaaggtcatcaat
ttcggcctgatctacggcatgtcggccttcggcctggcgagccagctcaatctcgagcgc
agcgccgcgcaggcgtggatcgaccgttacttcacgcgctatcccggcgtcgcgaactac
atgctgcgcacccgcgaatcggcgcgcgcgcagggctacgtcgagaccgtcttcggccgc
cgcctctatctccctgaaatcaacgcgaggaatccgcaacgccgacaaggcgccgaacgc
gccgcgatcaatgcgccgatgcagggcacggccgccgacctcatcaagctggcgatgatc
gcagtgcagcggtggatcgacagcgaaagactcggcacgcgcctactgctgcaggtccac
gacgaactgatcctcgaggtgcctgaacacgagctcgaacgcgtccgcgccgaactgccg
tcgcacatgtgcgacgtcgccgcgctcaaggtaccgctgcgggtcggcgtcggcgtcggc
ggcaactgggaagcggcgcactga
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