Thiobacillus denitrificans: Tbd_2575
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Entry
Tbd_2575 CDS
T00275
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tbd
Thiobacillus denitrificans
Brite
KEGG Orthology (KO) [BR:
tbd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tbd03016
]
Tbd_2575
Enzymes [BR:
tbd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Tbd_2575
Transfer RNA biogenesis [BR:
tbd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Tbd_2575
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AAZ98528
UniProt:
Q3SFS8
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Position
2649152..2651011
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AA seq
619 aa
AA seq
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MHVIFEEDGHFKAGSILSETEATAQVESASGKRSKVKAAAILLRFTAPAPEDVMSAAEKL
GEELDADFLWEAAGSEEFGFEQLAGEYYGHAPSPAESVALLQKLHASPIYFHKKGKGRYR
PAPPETLAAAKAGLEKKRIAAERQAYLAHELAAFRLPPEYASLIPRILIAPDKNTLEYKA
LEDAAAATGLSPLRLVERCGAIPSTLDFHLMSFLLEYFPRGTGFAPVTEPLDPPELPSSP
VRAFSMDDEATTEIDDALSVAWHDDGSVRVGIHIAAPALGIAPGSELDRVARERLSTVYF
PGDKITMLPETLIHHYTLGEAHDCPALSLYVDVAADLRVLGTETRLEMVHIADNLRHETL
EIEFNAETLRNPAVADYPYRRELEWLHDFAAVLEAGRGKTDTVERVDYSFKLDGDRISIA
PRKRGSPIDKVVSELMIFANAHWGGWLAEKRVPGIYRAQANGKTRMTTAPDPHVGLGVDQ
YAWSTSPLRRYVDLVNQRQLISLVRDEDPVYPPRSEALFSVVREFELAYDAYNDFQRRLE
RYWMLRWLIQENVDEIVASVIREDLVRFDALPMVTRAPSVAGLAPGTRVRLAISNIDLLD
ISFHAEYLETVPDSTAAVP
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtcattttcgaagaagacggccatttcaaggccggctccatcctgtccgaaacc
gaggcgaccgcgcaggtcgagtcggcttcgggcaagcgcagcaaggtcaaggccgcggcg
atcctgctgcgttttaccgcgccggcgccggaggacgtgatgagcgccgcggaaaagctc
ggcgaggaactcgacgccgacttcctgtgggaagcggccgggagcgaggagttcggcttc
gagcaactggccggggagtactacggacacgcgcccagcccggcggaatcggtcgcgcta
ttgcagaagctgcacgcctcgccgatctatttccacaagaagggcaagggtcgctaccgt
ccggcgccaccggagacgctcgccgcggccaaggccggcctcgagaagaagcgtatcgcg
gccgaacgccaagcctatctcgcccatgaactcgcggccttccgcctgccacccgaatac
gcgtcgctgattccgcgcatcctgatcgcgccggacaagaacacgctcgaatacaaggcg
ctcgaggacgccgccgccgcgaccggactgtcgccgctaaggctcgtcgagcggtgcggc
gcgatcccttcgacgctcgatttccatttgatgagcttcctgctcgaatattttccgcgt
ggcacgggctttgcgcccgtgacggagccgctcgacccgcccgagttgccgtcgagcccc
gtgcgagcattctcgatggacgacgaggcgacgaccgagatcgacgacgccttgagcgtc
gcgtggcacgacgacggcagcgtgcgcgtgggcatccacatcgcggcgccagcgctcggc
atcgcccccggttccgaactcgaccgcgtcgcgcgcgagcgtttgtcgaccgtgtatttt
ccgggcgacaagatcacgatgctgcccgagaccctgatccatcactacacgctcggcgaa
gcgcacgactgcccggcgctgtcgctatacgtcgacgtcgccgccgacctgcgcgtgctc
ggcaccgaaacgcgactcgagatggtgcacatcgccgacaacctgcgccacgaaacgctg
gaaatcgaattcaacgcggagaccctgcgcaacccggcggtcgcggactacccctatcgc
cgcgaactcgaatggctgcacgacttcgccgccgttctcgaagccggccgcggcaagacc
gacacggtcgagcgcgtcgactacagtttcaagctcgacggcgaccgcatcagcatcgcg
ccgcgcaaacgcggcagcccgatcgacaaggtcgtttccgaactcatgatctttgccaac
gcgcactggggtggctggctcgcggaaaaacgcgttcccggcatctatcgcgcacaggcc
aacggcaagacgcggatgacgaccgcgcccgacccgcacgtcggcctcggcgtcgaccag
tacgcgtggtcgacgtcgccgttgcggcgctatgtcgatctcgtcaatcagcgccaactc
atcagccttgtccgcgacgaggacccggtttacccgccgcgcagcgaggcgctgttttca
gtggtgcgcgaattcgagctcgcctacgacgcctacaacgatttccagcgccgcctcgag
cgctactggatgttgcgctggctgatccaggaaaacgtcgacgaaatcgtcgccagcgtg
atccgcgaggatctcgtgcgcttcgacgccctgccgatggtgacccgcgcgccctcggtc
gcggggctcgcgcccggaacccgcgtccgcctggcgatctccaacatcgacctgctcgac
atcagcttccacgccgaatatctcgagaccgtgcctgacagcacggccgccgttccgtag
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