Treponema brennaborense: Trebr_0718
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Entry
Trebr_0718 CDS
T01489
Name
(GenBank) 2,3 cyclic-nucleotide 2-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
tbe
Treponema brennaborense
Pathway
tbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Trebr_0718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tbe03019
]
Trebr_0718
Messenger RNA biogenesis [BR:
tbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Trebr_0718
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Leucyl-specific
Motif
Other DBs
NCBI-ProteinID:
AEE16160
UniProt:
F4LIB9
LinkDB
All DBs
Position
complement(893215..894747)
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AA seq
510 aa
AA seq
DB search
MISLVFWIGLPVAGIVLGWTIRWLYARFQLSASEQRAERIKQDAIKEAEAQKKEILLEAK
DQLIREQKQQERENRERRSDLQRMERRLMQKEEALDKRNEDMDKQEQELAARAQKMTERE
TVLLSEEERYRQELERISGLSAEEAKNLIIQNLENEARHDAQAMLNKIEQEAQLSSEKKA
RDILVTTIQRIATETTGDITVATVSLPSDEMKGRIIGREGRNIRTLETLTGVDIIIDDTP
EAVVISCFDPVRKEIAKVALERLISDGRIHPARIEEIVQKVTREIQQKIYEEGEKVLFDL
GIHNMNQEGVRALGRLYFRTSYGQNVLTHSKEVAIIAGMLAAEIGVNRDLAKRAAVLHDI
GKGAENDSDQNHAEVGMDMARKMGEDARVINAVGAHHNDVEPTSIEAIIVQIADAISAAR
PGARRETIDNYVKRLENLEAIAENFGGVEKAYAIQAGRELRVLVNNEKIPDQDVKELARK
IAKQIENDLRYPGRIKITMIRETRIIEYAR
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgatatctttagtgttttggatagggctccctgttgcgggaattgttcttggatggact
attcgctggctgtacgccagatttcaattatctgcatccgaacagagagcggagcggata
aaacaggacgctataaaagaagcggaagcacagaaaaaagaaattttactagaagcgaaa
gatcaactcattcgggaacaaaagcagcaggagcgggaaaaccgtgaacgccggagcgat
ttgcagaggatggagcgccgcctcatgcaaaaagaagaggcgctcgataaacggaacgaa
gacatggataagcaggagcaggaactggctgcgcgcgctcagaaaatgaccgagcgcgaa
acggttctgctgagcgaggaagagcggtaccgtcaggaactggaacgcatttccggactt
tccgccgaagaagcaaaaaacctgattatccagaatctcgaaaacgaagcgcgccacgac
gcgcaggcgatgctgaacaaaatcgaacaggaagcgcagctttcttccgaaaaaaaagcc
cgcgatattctggtaacgacgatccagcgcatcgcaaccgaaactacgggcgacatcacc
gtcgcaacggtatctctgccgagcgatgaaatgaaaggccgtattatcggacgggaagga
cgcaacatccgtacgctcgaaacgctgaccggcgtcgacatcattatcgacgacacgccg
gaagccgtcgtcatttcgtgtttcgatccggtgcgcaaggaaattgcgaaagtagcgctg
gaacggctgatttccgacggacgcatacaccccgcccgcatagaagaaatcgtgcagaaa
gtaacgcgcgaaatacagcagaaaatttacgaagaaggtgaaaaagtactgttcgacctc
ggtattcacaacatgaatcaggagggcgtgcgcgcgctgggacggctgtatttcagaacc
agctacgggcagaacgtactcacgcactcgaaagaagtcgcaatcatcgcgggtatgctc
gcggccgaaatcggcgtaaaccgtgatttggcgaagcgcgccgcggtgctgcacgatatc
ggaaaaggtgcggaaaacgattccgatcagaaccacgcggaagtgggtatggatatggcg
cgtaaaatgggagaagacgcacgcgttatcaacgcggtcggcgctcaccacaacgacgta
gaaccgacgagcatcgaagccattatcgttcagattgccgacgcgatttcggccgcccgt
ccgggcgcgcgccgtgagacgatcgacaattacgtaaagcggcttgaaaaccttgaagcg
attgcagaaaacttcggcggcgttgaaaaagcatacgccatacaggccggccgcgaactg
cgcgttctggtcaacaacgaaaagattcccgatcaggacgttaaagaactggcgcggaaa
attgcaaaacagattgaaaacgatttacggtatccgggcagaataaaaataacgatgata
cgcgaaacgcgcattatcgaatacgcacggtaa
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