Treponema brennaborense: Trebr_1353
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Entry
Trebr_1353 CDS
T01489
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tbe
Treponema brennaborense
Pathway
tbe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Trebr_1353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tbe03400
]
Trebr_1353
Enzymes [BR:
tbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Trebr_1353
DNA repair and recombination proteins [BR:
tbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Trebr_1353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEE16777
UniProt:
F4LMN0
LinkDB
All DBs
Position
1599781..1603338
Genome browser
AA seq
1185 aa
AA seq
DB search
MNTLLSNSLQETVHHWDSVGSAVRLFSSDSAVFPYELEGVQGSLYAFLIAEYAAANPGAT
IVIIVPNEKDAQDFELDLSAAAPGVSVEKLSWWGMVPYRTVPRGSSVFGERAALLAKLAA
RREKAIQTAVPPSGTSNSADTAIFIVTQRALQTPVPPPDYVESLLFRIRKGDSFDPAAIA
ERLSAQGYTRVPRVTVRGEFTLRGEVLDIFMPGQQCAHRIVFDFDTVEQIKTFDPEMQNS
LETLGELLIYPMKEVVWTDEFAHKLETVLRTSNEYAPVKTNVLTEDGKNPEDVYSAAADK
LIGELLIQRESEGEELFYSLLFDRAHSILDYLDARATVFFFDYDRLDNAQESFEREYTGL
YRKARVVQPVPPPQQLLFKFGELVPVHEKRVLFRTLHTNVVEQATQEKTGKRRLFFEADP
PRSFFGNINYLKESIASLVADGWTIYIYADSENQSLRVKELLKDFADKPVVVVPEALSAG
FGIPALKVLVVQENEIFGRRKHIPKSVKHVKSAVIDTFVELNPGDYVVHVNYGIGLFKGI
ERVKAMGNERDYIKLEYDDEEIVFIPIEQVNLVQRYIGNEGCAPRLDRLGSKSWENRKNK
VKKSVEDIAQKLIDLYSRRKAARGFPFPKDTEWQTAFEAAFPYDETDDQLTVTAEVKADM
EKPVPMDRLICGDVGYGKTEVAMRAAFKAVMGGKQVAFLAPTTILAEQHYETCTERFENF
PVRIAHMSRFVSKAEQKNILEKLKTGGVDILVGTHRIIQKDVIFKELGLMIIDEEQRFGV
KDKERLKELKTNIDSLAMSATPIPRTLHMSLLKIRDMSLLTTPPQNRQPIETVIDSYNDD
RVATAIRREAERGGQVFYLHNRVETLEETRIKLEQLVPEMLVDTAHGQMSAGELDDIFRR
FKMGGFHVLVATTIIENGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRKAYAYLLY
PENKALSEIAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGKDQSGEMYSVGFDLYL
RLLEEAVQRLTNDHYEAENEVLLELEYTGFIPDSYITNPQTKMEIYKKISGIANRDELER
MYGELQDRFGPIPDEVSSLLSLAEIRIICKKLHIATLRERGGKVNIEFAQVSGISVEKVL
RLIKESGGRVKLDAARPNVLLLEIGKIGLKEKSEFIREKLETLLA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaatacattattatcaaattctttgcaagagacagttcatcactgggacagcgtcggt
tcagccgtacggttgttttcttccgattcggccgtttttccatacgaattggaaggcgta
cagggaagtctgtacgcgtttttaatcgccgaatacgccgctgcgaatccgggtgcaacg
atagtcatcatcgtgccgaatgaaaaggacgcgcaggattttgaactcgacttgtcggcc
gccgcccccggcgtatcagtggaaaaactgtcctggtggggaatggtgccgtatcgaaca
gtgccgcgcggatcgtccgtattcggcgaacgggcggcgctgctggcaaaacttgccgca
cgccgtgaaaaagctatacaaacggccgtaccgccgtctggcacttcaaattctgccgat
acggcaatttttatcgtgacacagcgcgcgcttcagacaccggtgccgccgcctgactac
gtagaatcgctgcttttccgcataagaaaaggggacagttttgaccccgcggcgatcgcg
gaacgcttgtccgcccaaggatacaccagagttccgcgcgttaccgtccgcggtgagttc
acgctgcgcggagaagtactcgatattttcatgcccggacaacagtgcgcgcaccggatc
gtattcgatttcgacacggtggaacagattaaaactttcgacccggaaatgcagaattcg
ctagaaacgctcggcgaactgttgatttatccgatgaaagaagtcgtctggacggacgag
tttgcccacaaacttgaaacggttctgcgtacgtcgaacgaatacgcaccggttaaaacg
aacgtcctgaccgaagacggcaaaaatccggaagacgtttattcggcagcggcggacaaa
ctgatcggtgaactgctgattcagcgggagagtgaaggcgaagagctgttttattcgctg
ctgttcgaccgcgcccattcgattctcgactatctggacgcacgggcgacggtgtttttc
ttcgattacgaccggctcgacaatgcgcaggaaagtttcgagcgcgaatatacaggtttg
taccgcaaagcccgcgtcgtgcagcccgtgccgccgccgcagcagctcttattcaaattc
ggagaactcgtgcccgttcacgaaaaacgggtactgttcagaacgctccatacgaacgtc
gtcgaacaggcgacgcaggaaaaaacgggcaaacggcggctcttttttgaagccgatccg
cccagaagttttttcggcaacatcaactatctgaaagaatcgatcgcgtcgctcgtcgcc
gacggctggaccatctatatttacgcagacagcgaaaaccagtcgctgcgcgtcaaagaa
ctgctcaaggattttgccgacaaaccggtcgtcgtcgttcccgaagcgctttcggccggg
ttcggcatacctgcgctcaaagtgctcgtcgttcaggaaaacgaaatattcggacggcgc
aaacatattcccaaatcggtcaaacacgttaaaagcgccgtcatcgacacgttcgtagaa
ctcaatccgggcgattacgtcgtgcacgtcaattacggcatcgggctgtttaaaggcatc
gagcgcgttaaagcgatgggaaacgaacgcgattatatcaaactcgaatacgacgatgaa
gaaatcgtttttatcccgatcgagcaggtcaacctggttcagcgttacatcggcaacgaa
ggctgcgcgccgcggctcgaccggctcggctcaaaaagctgggaaaaccgtaaaaataaa
gtcaaaaaatcggtcgaagacattgcgcaaaaactgatcgacttatattcgcggcgcaaa
gcggcacgcgggtttccgtttcccaaagataccgagtggcagacggcgttcgaagcggcg
tttccgtacgacgaaaccgacgatcagcttaccgtaacggcggaagttaaagccgacatg
gaaaaacccgttccgatggacaggctcatatgcggagacgtcggctacggaaaaacggaa
gtcgccatgcgagccgcgttcaaggccgtcatgggcggaaaacaagtggcgtttctcgcg
ccgacgacgattcttgccgagcagcattacgaaacctgcaccgaacgctttgaaaacttt
cccgtcagaatcgctcacatgtcgcgcttcgtctccaaagccgaacagaaaaatatcctt
gaaaagctcaaaaccggcggcgtcgatattttggtgggaacgcaccgtatcattcaaaaa
gacgtaatttttaaagagctcggcctgatgatcatagacgaagagcagcgattcggcgtc
aaggacaaagaacggctcaaggaactgaaaaccaacatcgactcgctggccatgagcgcg
acgcccataccgcgaacgctgcacatgagtctgctgaaaatccgcgacatgagtctgctc
accacgccgccgcaaaaccggcagccgatcgaaaccgtcatcgacagctataacgacgat
cgcgtcgccaccgctatcagacgtgaagcagaacgcggcggacaggtgttctatctgcac
aatcgcgttgaaacgcttgaagaaacgcgcataaagctggaacagttggttcccgaaatg
ctcgtagacacggcgcacggccaaatgagcgcgggcgaacttgacgacatattccgccgc
ttcaaaatgggcggttttcacgtactcgtggcgacgacgattatcgaaaacggtatcgac
attccgaacgtcaacacgataatcatcgaccgcgccgacatgtacggagtgtcgcagttg
taccagctgcgcggacgggtaggccgcagcgaccgcaaagcgtacgcgtacctgctgtat
cctgaaaacaaagcgctctccgaaatcgccatgaagcggctgcaggttatcagcgacttt
acggaactcgggtcaggattcaaaatcgccatgaaagatatggaaatccgcggcgcaggc
aatctgctgggaaaagatcaatccggcgaaatgtattcggtcggattcgacttgtacctg
cggttgcttgaagaagcggtacagcggctcacgaacgatcattacgaagcggaaaacgaa
gtgctgcttgaactcgaatataccggattcattcccgattcgtatattaccaatccgcag
acgaaaatggagatttacaaaaagatttccggcattgcaaatcgcgacgagcttgaacgg
atgtacggagaattgcaggatcggttcggcccgattccggacgaggtttcgagtctgctg
tcgctcgccgaaatcaggattatctgcaaaaaactgcacatcgccacgctcagggaacgc
ggcggaaaggtcaacatcgaattcgcgcaagtgtccggtatttcggttgaaaaagtgttg
cggctcatcaaggaaagcggcggccgtgtaaaattggacgcagcccgcccgaacgtattg
ctgcttgaaatcggtaaaatcggattaaaagaaaagagtgagtttatccgcgaaaaactg
gaaacattgcttgcataa
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