Treponema brennaborense: Trebr_2300
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Entry
Trebr_2300 CDS
T01489
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tbe
Treponema brennaborense
Pathway
tbe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tbe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Trebr_2300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tbe03021
]
Trebr_2300
03400 DNA repair and recombination proteins [BR:
tbe03400
]
Trebr_2300
Enzymes [BR:
tbe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Trebr_2300
Transcription machinery [BR:
tbe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Trebr_2300
DNA repair and recombination proteins [BR:
tbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Trebr_2300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
BSH_YknX
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AEE17709
UniProt:
F4LLR5
LinkDB
All DBs
Position
complement(2703762..2708003)
Genome browser
AA seq
1413 aa
AA seq
DB search
MRDIQDFDSLMIKLASPETIRSWSYGEVKKPETINYRTLRPEKDGLFCERIFGTTKEWEC
FCGKFKSIRYKGVVCDRCGVEVTHFKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDL
QVAALRSVLYYEKYIVIDAGDTDLKKMQLLTEDEYIEAQERYGGSFSAGMGAEAIKTLLE
NLNLDELAAELRAKMVEKGAKSDKRLLKRIEIVENFRSSGNKCSWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLMQLSAPDIIIRNEKRMLQEAVDALFDNSK
RKRVVKGASNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPTK
MALELFKPFIMKKLVDKDVVYNVKKAKMLVEQESPEVFAILDEVVREHPVMLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAFNADFDGDQMAVHVPLTQAAQMECWTLMLSARNLL
DPANGKTIVYPSQDMVLGIYYLTKIMPSGKGTGKRFSSVDEVFLAAETKSIDWQAEIKVP
VAKAPYNGQVVSTTAGRLRFNEEMPADIEFVNALLGDKELKKLIEKVYKEQGPWLTVQML
DAIKAVGYKYATFFGATISMDDIIVPPEKEEMIGTANKKVDAIQKQYHEGHITQDERYNR
VCDIWSKTNEELTNIMMKNLEKDKEGFNTIYMMATSGARGSRNQIRQLAGMRGLMAKPNG
DIIELPIRANFKEGLSVIEFFISTNGARKGLSDTALKTADAGYLTRRLVDIAQDVVINED
DCGTINGIEYSAVKDGDEVIEALRDRIVGRYTLERVLHPITHELLCDVNEYITDDLAAKI
DEAGVESIKLRTVLTCESRHGVCCKCYGRNLAHNKIVEIGEAVGIIAAQSIGQPGTQLTM
RTFHVGGTASKVSEENHIVLKYPVLIQDITGTHVVMDDGTWLFTRKGSMLVTRVINQYKL
EKGDKLLVEDGSRILKDIPLFTHGGKEVLSSDIARVIVRGNAVYLTSNDQKVEIQNGSSL
LVKAGDFVAANDPIATFDPFSEPIIAEVDGYVHFEDIIPGSTLAEVIDEETGKIEKTISE
LHLDTKQPRILITDEAGNEKGSYYLPGGAYLLINDNETITAGTVIAKTLKEASKTNDITG
GLPRVSELFEARKPKSLSVLSQISGTVQFKGITKGKRVVVVVDKYGKSFDHLVPMTKRLL
VRDGDTVEAGEKLCDGALNPHDILAILGENALQNYLMDEIQQVYRMQGVSINDKHIGVIV
RQMLRKVEIVAVGDTRFIYGQQVDKYKFHEENRRVMEEGGQPAIARPMFQGITKAALNID
SFISAASFQETTRVLTNAAIAGSTDYLRGLKENVTIGHLIPAGTGIRNYRNVKLFDENAT
DLDEQMNEIIERRKLEKVMEAQVADTSFDSEED
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgcgggatatacaagatttcgacagtttgatgattaagctcgcttcgcctgaaacgatc
cgttcgtggtcgtacggcgaagtcaagaagcctgaaaccataaattaccgtacgctgcgg
ccggagaaagacggtctgttctgtgaacggattttcggtacgaccaaagaatgggaatgc
ttttgcggtaagttcaaatccatccgttataagggcgtcgtgtgcgaccgctgcggagtg
gaagttacgcattttaaagtccgccgcgagcgcatgggacatatagaacttgcggctccc
gtttcccacatttggtattatcgctccgttccttcccgcatgggattgttgcttgatttg
caggtcgcggcattgcgttccgtattgtattacgaaaaatacatcgttatcgacgcgggt
gacaccgaccttaaaaaaatgcagcttctcacggaagacgaatatatcgaagctcaagaa
cgttacggcggatctttctctgccggaatgggtgcggaagcgataaaaacgcttttggaa
aacctgaatctggacgaactcgccgccgagctgcgcgcgaagatggtcgaaaaaggtgcc
aaaagcgataaacgtctgttgaagcgtatcgaaatcgtagaaaatttccgttcgtcaggc
aataaatgttcatggatgattctcgacgtcattccggtcattccgccggaattgcgcccg
atggtgcagctcgacggcggtcggtttgcaacgtccgatttgaacgatctgtaccgccgc
gttatcaaccgcaacaaccgtctcaaacggctcatgcagctttccgcgccggacatcatt
atccgcaacgaaaagcgtatgctgcaggaagcggtggacgccctgtttgacaattccaag
cgcaaacgcgtcgtaaaaggtgcgtcgaaccgtccgcttaaatcgatttccgatatgctc
aagggtaagcagggacgtttccgccagaatctgctcggtaaacgcgtcgactattccggc
cgttcggtaatcgtcgtcggtcccgaactgaaattgtggcagtgcggtttgcccacgaaa
atggcgctcgaactgttcaagccgtttatcatgaaaaaactggtggacaaagacgttgtc
tacaatgttaaaaaagcgaaaatgctcgttgaacaggaatcgccggaagtattcgccatt
cttgacgaagtcgtccgcgaacatccggttatgctgaaccgcgcgccgacgctgcaccgg
ctcggtattcaggcgttcgagccggttttggttgaaggaaaagcgataaaactgcacccg
ctcgtctgtcacgcgttcaacgccgacttcgacggtgaccagatggccgttcacgtgccg
cttacgcaggccgcccagatggaatgctggacgctgatgctttcggcgcgtaacctgctc
gatccggcgaacggtaagacgatcgtgtatccgtcgcaggacatggttctcggtatttat
tacctgacgaagatcatgccgagcggaaaaggaacgggaaagcgtttcagttccgttgac
gaagtgtttctggccgccgaaacgaagagtatcgactggcaggccgaaatcaaggttccc
gtcgcgaaagcgccgtataacggacaggtcgtatcgacgactgccggacggctccgcttt
aacgaagagatgccggccgatattgaattcgtgaacgcgctgctcggcgataaggaactg
aaaaagctcattgaaaaagtctataaagaacagggcccgtggctgaccgttcagatgctc
gacgctatcaaggcggtcggatataaatacgcgacgttcttcggtgcaaccatttccatg
gacgatattatcgtgccgccggaaaaagaagaaatgatcggtacggcgaataaaaaagtc
gatgcgattcaaaagcagtatcacgaaggccatattacgcaggacgaacggtataaccgt
gtgtgcgatatctggtcgaaaacgaacgaagaactgaccaacatcatgatgaagaacctt
gaaaaagacaaggaaggcttcaatacgatttacatgatggccacgtccggagcgcgcggt
agccgcaaccagatccgtcagttggccggtatgcgcggactgatggcgaagccgaacggc
gacatcatcgaattgccgattcgggcgaacttcaaggaagggctgtccgttatcgaattc
ttcatttcaacgaacggtgcccgtaagggtctgtccgataccgcacttaaaacggccgac
gccggttatctgacccgccgtctggtcgatatcgcgcaggatgtcgtgattaacgaagac
gactgcggcacgatcaacggtatcgaatattccgccgtaaaagacggagacgaagttatc
gaggcgttgcgagaccgcatcgtcggacggtacacgcttgaacgcgtgctgcatccgatt
acgcacgaactgctgtgcgacgtaaacgaatatatcacggacgatctggctgccaaaatc
gacgaggccggggtggaaagcattaagctgcgtaccgttttgacgtgtgaaagccgtcac
ggcgtgtgctgcaaatgttacggccgtaacctcgcgcacaataaaatcgttgaaatcggt
gaagcggtcggtattattgccgcgcaatccatcggtcagcccggtacgcagctgacgatg
cgtacgttccacgtcggcggtacggcgtcaaaagtcagtgaagaaaaccacatcgtgctg
aaatatccggtgcttattcaggatattaccggtacgcacgtcgtgatggacgacggtacg
tggctgttcacccgtaaaggctccatgctcgttacgcgcgttatcaatcagtataagctt
gaaaaaggcgacaaactgctcgttgaagacggcagccgcatactgaaggatattccgctg
tttacgcacgggggtaaagaagttctttcttccgatatcgcgcgcgttatcgtgcgcggc
aatgcggtgtaccttaccagcaatgatcagaaagttgaaatacagaacggttcttcgctt
ctcgttaaggccggtgatttcgtcgccgcgaacgatccgatcgcaacgttcgacccgttc
tcggaaccgattatcgccgaagtggacggatacgttcactttgaagacatcattcccggt
tcgactttggcggaagttatcgacgaagaaaccggaaagatcgaaaaaacgatcagcgaa
ctgcatcttgatacgaagcagccgcgcattctgatcaccgacgaggcgggtaacgaaaag
ggaagttactatcttcccggcggcgcgtatcttcttatcaacgataatgaaacgattacg
gccggtacggttatcgcgaagacgctgaaagaagcgtcgaaaacgaacgatattaccggc
ggtctgccgcgcgtttccgaattgtttgaagcgcgcaagccgaagtcgctgtccgttctt
tcacagatttccggaaccgtacagttcaagggaattacgaaaggcaagcgcgtcgtcgta
gtagtagacaaatacggcaaatcgttcgatcatcttgtaccgatgacgaaacggctgctc
gtccgcgacggcgacaccgttgaagccggagaaaaactgtgcgacggtgcgttaaacccg
cacgacattttggccattctcggtgaaaacgcactgcagaattatctgatggatgaaatc
cagcaggtgtaccgtatgcagggtgtaagcatcaacgataagcacatcggtgtcatcgtg
cgccagatgctgcggaaggtcgaaatcgttgccgttggtgatacgagattcatttacggc
cagcaggtcgataaatataagtttcatgaggaaaatcgccgtgttatggaagaaggcggt
cagcctgccatcgcccggccgatgttccagggtattacgaaagcggcgctgaatatcgat
tcgtttatttcggcggcttctttccaggaaacgacccgcgttctgacgaacgccgcgatt
gccggttcaaccgactatctgcgcggtctgaaggaaaacgttacgatcggtcatttgatt
cccgcgggaaccggtatccgtaattatcggaacgtcaaactgttcgatgaaaacgcaacg
gatctcgacgaacagatgaacgaaatcattgaacgccgtaaacttgaaaaagtgatggaa
gcgcaggtcgcggacacgtcgttcgattcggaagaagactga
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