Trematomus bernacchii (emerald rockcod): 117468696
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Entry
117468696 CDS
T09643
Symbol
nectin1b
Name
(RefSeq) nectin cell adhesion molecule 1b
KO
K06081
poliovirus receptor-related protein 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03266
Virion - Herpesvirus
tben04514
Cell adhesion molecule (CAM) interaction
tben04517
IgSF CAM signaling
tben04520
Adherens junction
tben05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
117468696 (nectin1b)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
117468696 (nectin1b)
04517 IgSF CAM signaling
117468696 (nectin1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
117468696 (nectin1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117468696 (nectin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117468696 (nectin1b)
04090 CD molecules [BR:
tben04090
]
117468696 (nectin1b)
Cell adhesion molecules [BR:
tben04515
]
Immunoglobulin superfamily
Nectin family
117468696 (nectin1b)
CD molecules [BR:
tben04090
]
Proteins
117468696 (nectin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2-set_2
Ig_3
V-set
Ig_2
I-set
ig
Ig_6
Ig_PVRIG
Motif
Other DBs
NCBI-GeneID:
117468696
NCBI-ProteinID:
XP_033968811
LinkDB
All DBs
Position
Unknown
AA seq
499 aa
AA seq
DB search
MAMCVGMWILLLALHVQAGDGQMVQMDSSKSGFVGSQVELRCIFINSNPPVKISQVTWQK
FLNGTKQNVAIANPALGVSVLQPFKERVTFKQAAVRHRTPSLEDTTIVFSSLQLSDEAAY
ICEYTTFPAGNRENMVNLTVFARPTTRMTLTTPTIVARPTKRKMTVATCISANGKPPSVI
KWDTRLKGEATFQETRNQNGTVTVRSNYVVVPSRETHKQKLTCIVTYRSERITESVVLNV
QYEPEVTIEGFDANWYLNRLNVQLTCKAEANPPVTIYQWKLLNGSLPSNVEIKNNTLFFK
GPVTYDQAGTYVCDATNGIGTRTGIVDVNITEFPNNPPTRLPDVTPSQYNAGAAIGGAVG
GVALLGVAATLLSVYLRHRQRTFKGDYSTKKHVFGNGYSKAGGLPAHPPIPTNLLYPDDS
DDEKKPAQISGPAGFEASVPDFDPEQEDLKRPYFTVDEGESRDYDERTLNFQYDREPEIA
DDMISQTDGSVISKKEWYV
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgtgtgtggggatgtggatactcctgctagccctgcacgtccaagctggcgac
gggcagatggtgcagatggactccagtaagtctggctttgtgggatcacaagttgaactg
cgctgcatcttcatcaacagtaaccctcccgtcaagatctctcaagtcacctggcagaag
ttcctcaacggcaccaaacagaacgtggccatagccaacccggccctcggcgtgtcagtc
ctgcagccctttaaggagcgcgttaccttcaagcaggcggccgttcgccaccgcacgccc
tcgctggaggacaccaccatcgtgttctccagcctgcagctgtctgatgaagctgcctac
atctgcgagtacaccacgtttccagcaggaaacagggagaacatggtcaatctcactgta
tttgcccggcctacgacacgtatgaccctgacaacccccacaattgtggccaggcccacg
aagcgcaagatgactgtcgccacttgtatatcggccaatgggaagcccccaagtgtgatc
aaatgggacaccaggttgaagggtgaagccactttccaggagactcgcaaccaaaatggc
actgtgacggtgaggagcaactacgtggtggtgccgagccgcgagacccacaaacagaag
ctgacgtgtatcgtgacgtaccggagtgaaaggatcacagagagcgtggtgctcaacgtg
cagtatgaacccgaggtgacgatcgagggctttgatgcaaactggtacctgaaccgtctg
aatgttcagctgacctgcaaggccgaggctaacccccctgtcaccatctaccagtggaaa
ctcttgaacggctccctgcccagtaatgtggagatcaagaacaacaccctgttcttcaag
ggacctgtgacctacgaccaggccggcacctacgtctgcgacgcgaccaacggcatcggg
actcgaactggcattgtggacgtcaacatcacagaattccctaacaacccgccaaccagg
ctccctgacgtcacgccgagccagtacaatgcaggcgccgccatcgggggcgctgtgggg
ggagtcgccctgttgggggtggcggccacactgctctccgtatacctgcgccaccgccag
cgcaccttcaaaggagactacagcaccaagaaacacgtgttcggtaacgggtacagtaag
gccggcggtctgcccgcacaccctccgatccccacgaacctcctgtacccggacgactca
gacgacgagaagaaacccgcccagatcagcggccccgctgggtttgaggcgagcgtgccc
gattttgacccagagcaagaggacctgaagaggccctatttcactgtggatgaaggggag
agccgagattatgatgagcggactctgaatttccagtatgatcgtgaacctgagatagcc
gatgatatgatctcacaaaccgacggctctgtcatttctaagaaagagtggtatgtttag
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