Trematomus bernacchii (emerald rockcod): 117468735
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Entry
117468735 CDS
T09643
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117468735 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
tben04990
]
117468735 (lrfn1)
Cell adhesion molecules [BR:
tben04515
]
Immunoglobulin superfamily
SALM family
117468735 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
tben04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
117468735 (lrfn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
Ig_2
ig
LRR_5
fn3
LRR_9
LRR_14
Ig_DSCAM-DSCAML_C
C2-set_3
Sp38
DUF4834
PRIMA1
Motif
Other DBs
NCBI-GeneID:
117468735
NCBI-ProteinID:
XP_033968869
LinkDB
All DBs
Position
Unknown
AA seq
758 aa
AA seq
DB search
MDRLVLCVLLCAALAKGYSCPGRCICQHLSPTLTLLCAKTGLLFVPPSIDRRTVELRLTD
NFITIIRRKDFFNMTSLVHLTLSRNTISQIIPLAFLGLRSLRALHMDGNRLSAIKTDHLK
GLINLRHLILGNNQIHQVADTAFDEFVVTIEDLDLSNNNLRTLPWEAIARMTNINTLTLD
HNLIDHIGTGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSDTTGSSSSTLAVSFGG
NPLHCNCELLWLRRLTREDDLETCASPDHLMDKYFWSIQEEEFICEPPLITKHLTTKPYV
MEGQGVTLKCKAVGDPDPEIHWRSPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNCV
ASNAAGIATAAVEINMIPLPLFVNNTGHMREDPGLSDITTSSKSGNDTKGYDKQDRRVMV
SELTSSSAVIRWPSERHIPGIRMYQIQYNSTADDTLVYRMIPSTNKNFLINDLAAGREYD
LCVLAVYDDGITSLTATRVVGCVLFHTANEVSQCRFMHSQFLGGTMIIIIGGIIVASVLV
FIIILMIRYKAYSGPEDDKSKVSSSMHSQTNGSQQRLQRSASKQPSDEGQHDAHAPKQCM
ALVMRADNEKKENPAATTAILEVELPPMTADKMKRRTSLDAQCSGPPSEDTQTDSSLTGS
TMSLCLIGPNAGTKEAPRLKDKKGALANMGLLPNELARTRHRFSFDGGDYSIFQSHSYPR
RARTRWHKSTNQLNTESSPLANRRVTFSSTEWMLESTV
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggaccggctggttctgtgcgtgctgctgtgcgcagctctggcgaagggatacagctgc
ccgggccgctgcatttgccagcacctctcacccactctgaccctgctctgtgctaagacc
ggtctgttgttcgtgcccccctccatcgaccgcaggaccgtggagctaagactcacagac
aacttcatcaccatcatccgcaggaaagactttttcaacatgaccagtttggtgcacctc
acgttgtcccgtaacaccatcagccagatcatccctctagcctttctcggcctgcggtcc
ctgcgggcgctccacatggacgggaaccgcctcagtgcgataaagacagaccacttaaaa
ggcctcatcaacctgcggcacctcatcttgggcaacaaccagatccatcaggtggccgac
accgcctttgatgagtttgtcgtcacgatagaggacttggatctttccaataacaacctg
cgcacccttccctgggaagccatagccagaatgaccaacattaacacgctcacgctggac
cacaacctgattgaccacattggaacggggacttttacactgctcaccaagctggtgcgc
ctggacatgacgtctaacaggctgcagaagctgccgccggacagcctgttccagcacgct
caggtgctgtcggacactacgggctcaagctcctccaccctggctgtgagctttggagga
aaccctcttcactgtaactgtgagctgctctggctccgcaggctgacacgagaggacgat
ctggagacctgtgcctcgccggaccacctcatggacaagtatttctggtccatccaagag
gaggagtttatctgcgagcctccactgatcacaaaacatcttaccacaaagccctacgtg
atggaagggcagggtgtgactctcaaatgcaaagcagtgggtgatccagacccagaaatt
cactggcggtctccagatggcaagctggtgcataacaactcccgcaccatcctttatgat
aatggcacccttgatattctcatcaccacgctgaaggacagtggggcctttaattgtgtg
gcctccaatgccgcaggcatcgccacagctgctgttgagatcaacatgatccccttaccc
ttgtttgttaacaacacaggccacatgcgtgaggaccccggcctctcagacatcaccacc
tcctccaaatctggcaatgacaccaagggctacgacaagcaggacaggagggtgatggtg
agcgagctgacctcgtcctccgctgtgattcgctggccatcagagcgccacatccctggc
atcaggatgtaccagattcagtacaacagcaccgcagatgatactttggtgtacagaatg
atcccatctaccaacaagaacttcttaatcaatgatctggccgcagggcgggagtatgac
ctttgtgtgctggcggtttacgacgacggtatcacatcgttaacggccacacgtgtggtt
ggctgtgtgcttttccacacggccaacgaggtcagccagtgccgcttcatgcacagccaa
ttcctgggaggcactatgatcattattattggcggtataattgttgcttcagtgctggtg
ttcattatcatcctgatgatacgttataaggcctacagcggcccggaggacgacaagtcc
aaggtcagctccagcatgcactcgcagaccaacggcagccagcagcggctccagcgctcc
gcttccaagcaaccgtctgatgagggccagcatgatgcgcacgcacccaaacagtgcatg
gcgctggtgatgagggcggacaatgagaagaaggagaatccagcagccaccactgccatc
ctggaggtggagctgcctccgatgactgccgacaagatgaagagaagaaccagcctggac
gcgcagtgctccggcccgccatccgaggacacgcagacggacagtagcctgacgggctcc
accatgtccctgtgtctcataggccccaacgctggcaccaaggaggctcccaggctcaag
gacaagaaaggtgcccttgccaacatgggattactccctaatgagctggcacgaactagg
cacagattctcttttgacggaggggattactccatttttcagagtcatagttacccacgc
agagcgaggacaaggtggcacaagtccaccaaccagctcaacacggagtcctcgccgctc
gccaacaggagagttacgttcagcagcactgagtggatgcttgagagcacagtctga
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integrated database retrieval system
