Trematomus bernacchii (emerald rockcod): 117468908
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Entry
117468908 CDS
T09643
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117468908
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
117468908
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
DUF6444
Motif
Other DBs
NCBI-GeneID:
117468908
NCBI-ProteinID:
XP_033969171
LinkDB
All DBs
Position
Unknown
AA seq
2114 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWRRFVWQGPTSSPILFPVTEEDPILCSFSRC
LSADVLSVWRRHHTPGRRELWLFWWGDDPSFAELIHNELSSEEDGEWESGLSYECRTLLF
KAIHNLLERCLMNRGFVRIGKWFVKPYQKEEKTINKSEHLSCAFTFFVHGDSNVCTSVEI
AQHQPLQRLNEEHLSLAQQNNSPLQVILSPYGLNGTLTGQAFKMSDHPTQKLIEEWRQFY
PISPNPKDVQEDKMEDTDWEDDSLAAVEVLVAGVRMVYPSCLVLLPLSDLPAVVLQGSVN
TSGSLCGAQQGHAAHRDPAMSSVTLTPPTSPEEAQTDYQPAQRWLKLSSASDGYSSNNTL
HGGKIPRRLASQMVESVWQEYNINRTGNKRKFTTLTNGTCEEESDKTGLWDFVECTHRPH
CNCLRHKNQKQRSSSTSGHPPSSGQPAQPALKHKLGEKLEKGDKQQKRPQTPFHHRNSVS
EEQTMEPQNQRLCLRSQDDGSYPSLHHVDTVSSKAPTLHTHPADLNGSPPPPPLSPHPCD
HVEGDMTPGGMKNSSTPIHQTFYPPSVEPCLLPQKGSEEDPRLENMPMPFPQSYNETLEP
TVFVGSAINPNEDSTHNPWKYFNLPRKKASNFLTPLLPVDKIRDDSGGGGGTENVISVTE
LMSGSMHTLKVSQELVRAYAQRRNSHYASASGDREHGDDSDPYAFVEGDEEFSFTEKKDK
SGSERDGNKKNKGDEDNGSADDGQGASGSKPTASTSLIHENDLAVSYSDLDKIFNSDEDE
LVPGSKRAGVGSEDKFGCKDGKGASLDPLSCISSADLHQMFPTPPSLEQQGYSPMNSGGK
DSLEGGAGLTLLDGSQLNNHFKMEVEEGYCSPKPSEIKDFSFVYKPETCQLLIGCSMYAP
LKMLPSQCLLPIKLPEDCVYTPSWTMGKMELIPPVTNVNLLTKDSNVPSVEPDYSQTYTP
QTHTPFMSSSAPPSNSGTGILPSPATPRFSVPTPRTPRTPRTPRGPSSVQGSLKYDNSDL
YSPASTASTCRPVSSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCVCVCNMN
IRGADVGVYLKDNGEAQYPCTCGFSAVTNRRFGQSAGLFLEDELDVVVRGSDASRDTERC
FEELRASTAHKAGSLTEKPPDELILLLQDQCTNPFAPMAGVEYTKQSSAPSSFLRVEERD
CYNDCYMALEHGRQFMDNMSGGKVDEALVKSTCLHHWPKCKSADMSKLFSQDVLRVLLSL
QPVLQDTIQKKRSVRSWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLVGYEYDFV
VLSPFGLPYWEKLLLDPFGSQRDVGYVVICPENEALLRGAKTFFKDLSAMYEACQLGQHR
PICKSHPEGVLKVGATEGRSMTEQPLSDWFLKMAARDGNNEAFNRLKLFAQVCRYDLAPY
LSEQSLDSSLLSQRSPVVASPLSQTPSSSSTTSGPQSTNTTSSSISSAPVISTPPSASSG
PQTIGGMPSAKPSSYTPFGTSGLQGSSSQNGPQSNQQGAGGLAENGPSANQPQVPVEAPE
STMDRDKVGKPTDGESHAVSYPPAIVVYIVDPFSYEDADRDVHSSAYTLGLLRCYMEMLQ
FLPARIRNAVSVQIVPCQYLLQPVRSGERHLYSQHLKSLAFSVFTQCRRPLPNSTNFKAL
TGFGPGLAIDMALKDPERPECLRLYTPPFILAPIKDKQTELGETFGEASQKYNVLFVGYC
LSHDQRWLLASCTDQHGELLETCIISIDVPNRARRKKGSVRRVGLQKLWEWCLGLVQVTS
LPWRVVIGRLGRMGHGELRDWSILLSRRNLQSLSKRLKETCKLCGISAADTPSILSVCLV
AMEPQGSFVIMPDSVSTGSVFGRSTTLNMQTSQLNTPQDTSCTHILVFPTSAMVQVNTNT
AEPIDINFNPINPDGSDGMGLFDLFDNDMVDPDLINILPNSPTTSPVHSPGSHYHQGGDG
TKGQSADRMESHEEALNILQQPMALGYFVSTAKTGPLPDWFWSACPQAQNQCPLFLKASL
HLHVSSVQSDELLHSKHSHPLDSNHTSDVLRFVLEQYNALSWLTCDPATQDRRSCLPVHF
VVLTQMYNFIMNML
NT seq
6345 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgtgctttgtaccaaacggggccagtttggaggactgccactccaatctcttc
tgcctggctgatttgactggaataaaatggcggcgatttgtatggcaaggacccacctca
tcgcccatccttttccctgtgaccgaggaagaccctatattgtgtagtttcagccgatgc
ctgtctgcagatgtgctgagtgtgtggagaaggcaccacaccccgggtcgcagggagctc
tggcttttctggtggggggatgaccccagttttgccgagcttatccataatgagctctca
agtgaagaggatggtgagtgggagagtggcctgtcctacgagtgtagaacgcttcttttc
aaagccatccacaacctgttggagcggtgtctcatgaaccgtggctttgttcgcatcggc
aagtggtttgttaagccataccaaaaggaggagaagaccattaataaaagcgagcacctg
tcttgtgcattcacatttttcgtgcacggcgacagcaacgtgtgcacgagtgtggagatc
gctcaacatcagcctcttcagcggctgaatgaggagcatctcagcctcgcacagcagaac
aacagccctttgcaagtcatccttagcccatacggcttgaatgggaccctcaccggtcag
gctttcaagatgtcagaccaccccactcagaagctcatagaggagtggaggcagttctat
cccatcagcccaaatcccaaggacgtccaggaagataagatggaggatacagactgggag
gatgactctctggcggctgtggaggtcctcgtcgcgggagttaggatggtgtacccttcc
tgcctggtgcttctccccctgtcggaccttcctgctgtggtcctgcagggctcagtgaac
acctcaggaagcctgtgtggtgctcagcagggccacgctgctcacagagaccctgccatg
tcctctgtcactctgactcctccaacatcaccagaggaggctcagactgattaccagcct
gctcagaggtggctgaagttgtcctctgcgtcggatggctacagctctaacaacactctt
catgggggtaaaatccctcgcaggctggccagccagatggtggagtctgtgtggcaggaa
tataacataaaccgtacagggaacaagaggaagtttaccactttaaccaatgggacctgt
gaggaggagtcggacaaaactggtctttgggattttgtggagtgtactcacaggcctcat
tgcaattgcttacgacataagaatcagaaacagcgatccagcagcacctcaggacacccg
ccttcatccggccagcctgcccagccggccctcaagcacaagctgggcgagaagctggaa
aagggggataagcagcagaagaggccgcagacgccttttcaccaccgcaactctgtgagc
gaggagcagaccatggagccgcagaaccagaggctttgtttgagatcacaggacgacggc
tcgtatcccagtctgcaccacgtggacaccgtgtcctccaaagcccctacgctgcacaca
caccctgcagacctcaacggatccccgcctccccctccccttagcccacacccctgcgat
catgtagaaggtgacatgactcccggcggcatgaagaactcttccacgcccattcatcaa
acgttctatccgccatcggtggagccctgtctgcttcctcagaagggctcggaggaggac
cctcggctggagaacatgcctatgcctttcccccaatcctacaatgaaacattggaaccc
actgtctttgtgggttcagccattaaccccaatgaagactccacccacaacccctggaag
tatttcaacctgcccaggaagaaggcatcaaacttcctgacgcccctgttacctgtggat
aaaatacgagatgattctgggggaggtggaggaacagaaaacgtaatctccgtcacagag
ttgatgtcggggtccatgcataccctgaaggtgtcccaggagctggtcagggcctacgcc
cagcggagaaacagccattatgcctccgcttcaggtgacagagaacacggtgacgattca
gacccttacgcctttgtagagggagacgaggagttcagctttacagagaagaaggacaag
tctggctcagaaagggatggcaacaagaaaaacaagggggacgaggacaatggatcagca
gacgatggtcagggtgcatcgggcagtaaacctaccgcctccaccagccttatccacgag
aacgacttggccgtgtcatacagcgacctggataaaatcttcaattcagatgaagatgag
ctagtgcctggctccaaaagagctggagttggttcggaggacaagtttggctgtaaagac
ggtaaaggagcctcgttggatcctctatcttgcataagctcagcagacctgcaccagatg
tttcccaccccgccctccctggagcagcagggttactctcccatgaactccgggggcaag
gacagcctggaaggaggggcgggcctcaccctgttggacggcagccagctcaacaaccac
ttcaagatggaggtggaggagggatattgcagcccaaagccatcggaaataaaggacttc
tcctttgtatacaagccagagacgtgtcagttgttaatcggctgttccatgtacgcacca
ttgaagatgctaccaagccagtgtctgttgcctatcaaactgccagaagactgtgtgtac
acgcccagttggaccatgggcaaaatggaattgatacccccagtgacgaatgtcaatctc
ctcaccaaagacagtaacgtccccagtgtggagccagactacagtcagacctacaccccc
cagacccacacccccttcatgtccagcagtgcccccccgagcaacagcggcacaggcatc
ctgccctccccagccacgccgcgcttctctgtgcctacgcctcgcaccccacgcactcca
cgcactccccgcggcccgtcgagtgtccagggctcccttaagtacgacaactctgacctt
tactcccccgcctctactgcctccacctgtcgacctgtcagctctgttgagccggccact
gtaccttccatccccgaggctcacagtctctacgtcaccctcattctgtccgagtcagtc
atgaacctcttcaaggactgtaactttgacagttgctgcgtgtgtgtctgcaacatgaac
atcaggggagcagatgtaggggtgtacctcaaggacaatggcgaggcccagtacccctgc
acttgtggcttcagtgctgtcacaaatcggcgctttggccagtcggccgggctgtttctg
gaggacgagctggatgtggtggtgcgcggctcggacgccagtcgggacactgagcggtgt
ttcgaagagctgcgagcttccacggctcacaaagctggcagcctgacagagaagcctccg
gatgagctaatcctgctgctgcaggaccagtgcaccaacccttttgcccccatggcaggc
gtagaatacaccaagcagagctcagcacccagttcatttctgagggtggaagagagagac
tgttataatgactgctacatggcactggagcacggcaggcagttcatggacaatatgtca
ggaggaaaagtagatgaagcactagtgaagagcacctgtcttcatcactggccaaaatgc
aaatcagcagacatgagcaagctattctctcaggacgtcctgcgggtgttgttgtccctg
cagcctgtgctgcaggacaccattcagaagaagaggagtgtgcgctcctggggcgttcag
ggaccgctcacttggcaacagttccacaagatggctgggaggggatcatatggtaccgat
gagtctcctgagcctctgcccatccccacttttttggtcggttatgagtatgattttgtg
gtgctgtctccttttggcttgccatactgggagaagcttcttctggatccttttggttcc
cagagagatgtgggatatgttgtcatctgcccagagaatgaggctctactccgcggcgca
aagaccttcttcaaagatctgagtgctatgtatgaggcatgccagcttgggcaacacagg
cccatctgtaagagtcacccagagggcgtattgaaggtcggcgccacagaaggcaggagc
atgacggagcagccccttagtgactggttccttaagatggctgccagagacggaaacaat
gaagcctttaatcggctcaaactctttgctcaagtgtgccgttatgatctagctccatac
ctgtcagagcagtctttggatagctccctattgtctcagcgcagccctgttgtggcctct
cccttgtcccagacccccagctcttccagcaccacctcaggaccccagagcaccaacact
accagctccagcatcagctctgccccggtcatcagcacccctccctctgcctcctcaggc
ccacagacaatcggggggatgccctcagccaagccaagctcttacacgccgtttgggacg
tcaggcctgcagggcagctcctctcagaatggaccgcagtcaaaccaacagggggcgggg
gggctggcagaaaacggaccctcagccaaccagcctcaagtgcccgtcgaggcgccagag
agcacaatggatagagacaaagtgggcaagccaacagacggagagtcccacgctgtgtct
tacccgcctgccatagtggtgtatatcgtcgaccccttcagctacgaagacgccgaccga
gacgtccactccagcgcctacaccctgggactgctgcgctgctacatggagatgctccag
ttcctgcctgctcgcatcagaaacgctgtctcagtacagattgttccctgccagtacctg
ctgcagccggtgcgcagcggggagcgtcacctctacagccagcacctcaagtcgctggcc
ttctctgtgttcactcagtgtcggcggcctctgcccaactctaccaacttcaaggctctg
acgggctttggcccaggccttgccatcgacatggcactaaaggatccagagaggcccgaa
tgtctgcgcctgtacacgccgcccttcattttggctcctataaaagacaagcagactgag
ctcggggagacgtttggcgaggcttcccagaagtacaacgtcctgtttgtcggctactgc
ctttcccacgaccagcgctggctgctggcctcctgcaccgaccagcacggagaactgctg
gagacctgcattattagcatcgatgttcccaatagggcgcgcaggaaaaagggctcagtc
aggcgggtgggtttgcagaaactgtgggagtggtgtctcggcctggtgcaggtgacatcg
ctgccatggagggtggtcatcggacggcttggtagaatgggccacggggagctgagagac
tggagtattctgctgagcaggaggaacttgcagtctctcagtaaacgcctcaaggagaca
tgcaagttgtgtggcatctctgctgctgacactcccagcatccttagcgtctgtctagtt
gcaatggagccccagggatcctttgtcatcatgccagattctgtgtcgacaggttcagtg
ttcggtcgcagcaccacgctcaacatgcagacatcgcagctgaacactcctcaggacaca
tcgtgcacacacatcctggtgttccccacctcagccatggtgcaggtcaacactaacacg
gcagagcccatcgacatcaactttaaccccataaaccccgatggatctgacggcatgggc
ctcttcgacctgtttgacaacgacatggtggatccagacctcatcaacatcttgcccaac
tcccccacaacctcccctgttcactcccccggctcccactaccaccaggggggggacgga
acaaagggccagagtgctgaccgtatggagtcccatgaggaggctctgaacatcctgcag
cagcccatggcgctgggctacttcgtctccacagccaaaactggaccactgcctgactgg
ttctggtctgcctgccctcaagcccagaaccagtgccctctcttcctcaaggcctctctg
cacctgcacgtgtcttctgtccaatcagacgagctcctgcacagtaaacactcccacccc
ctcgactccaaccacacctctgatgtgctcagatttgttctagagcagtacaacgccctc
tcctggctgacgtgcgaccctgcgacccaggaccgacgctcctgtctgcccgttcacttc
gtggtgctcacacagatgtacaactttatcatgaacatgctctga
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