Trematomus bernacchii (emerald rockcod): 117468970
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Entry
117468970 CDS
T09643
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03030
DNA replication
tben03420
Nucleotide excision repair
tben03430
Mismatch repair
tben03440
Homologous recombination
tben03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117468970 (rpa1)
03420 Nucleotide excision repair
117468970 (rpa1)
03430 Mismatch repair
117468970 (rpa1)
03440 Homologous recombination
117468970 (rpa1)
03460 Fanconi anemia pathway
117468970 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117468970 (rpa1)
03032 DNA replication proteins [BR:
tben03032
]
117468970 (rpa1)
03400 DNA repair and recombination proteins [BR:
tben03400
]
117468970 (rpa1)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117468970 (rpa1)
DNA replication proteins [BR:
tben03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117468970 (rpa1)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117468970 (rpa1)
MMR (mismatch excision repair)
117468970 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
117468970 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
Motif
Other DBs
NCBI-GeneID:
117468970
NCBI-ProteinID:
XP_033969251
LinkDB
All DBs
Position
Unknown
AA seq
599 aa
AA seq
DB search
MTKLSEGAIEALSNSKGSNDAVLQLVNIRKIDGGSGPARYRVMMSDGVHTLSSFMLSTQL
NFMVEDDLLAPNCVCILKRHVTNILKDKRRVVIILEIEVVQPAEEVAGRIGDPTPYNDGQ
IKGPQSAPSSEIRAPLLQQNKKEVPRVFNKDFEKNNPSNMPSTPGGSSKVVPIASLNPYQ
SKWTVRARITNKSGIRTWSNSRGDGKLFSMEMVDESGEIRVTGFNQEVDKFFSLIEVGKV
YYISKGSLKIANKQYTSVKNDYEMTLNGDSSIIPCEDAGDVPVLQCDFVSIGDLEVREKD
AIIDVIGVCKSVDDVTRIITKNNKEVSKRTLNLMDMSGKVVTLTLWGEEAETFEGSGQPI
IVVKGAKLSDFGGRSLSASFNSTMMINPDIPEAHKLRGWYDKEGHAMDGQSMTEVKGGGG
GNTNWKTLSDVKTEHLGHGEKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQHNGM
FRCEKCDKEFPNFKYRLILSANIADYADNQWVTCFQETAESILGQNAAYLGQLKDSNEAA
FDEIFQQANFNTFVFRSRVKLETYNDESRIKATAVEVKPVDHLDYSKRLIMNIRKLAAQ
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctctcagagggtgccatagaggctctgtccaatagcaaaggtagcaacgat
gctgtgcttcagttggtgaacattcgcaagattgatggaggaagtggtccagctcgctat
cgggtgatgatgagtgatggcgtgcacacactatcctccttcatgctctcaacgcagctg
aacttcatggtcgaggacgacttactggccccgaactgcgtctgcattctaaagagacat
gtgaccaacatactgaaggataaacgacgggtcgtgatcattttggaaatcgaagtcgtc
cagcctgctgaagaggttgcaggaagaattggcgacccgactccttacaatgatggtcag
atcaaaggaccacagtcagcaccaagctctgaaatccgagcaccgctactgcagcaaaat
aaaaaagaagtgccaagagttttcaataaggactttgagaaaaataacccatccaatatg
cccagtactccagggggcagctccaaagttgtgcccatcgccagcctcaacccttatcag
tccaagtggaccgtccgcgcccgcattaccaacaagagcggcatccgtacgtggagcaat
tctcgtggggacggcaaactcttctccatggagatggtggatgagagtggagagattcga
gtgactggtttcaaccaagaggtggacaagttcttcagccttattgaagttggcaaggtc
tactacatctccaagggctccctgaagattgccaacaagcagtacacatcggtgaagaat
gattatgagatgactctcaacggagactccagcatcatcccctgtgaagacgcaggtgat
gttcccgtgctgcagtgtgactttgtatccatcggtgacctggaggtcagggaaaaagat
gccattattgatgtgattggcgtgtgcaagagtgtggatgatgtgacccgcatcatcaca
aagaacaacaaagaagtgtccaagaggacgctcaacctgatggacatgtctgggaaggtg
gtgactctcacgctgtggggagaagaggcagagacgtttgaaggctctggtcagcccatc
atagtcgttaagggggcaaagctttcagacttcggaggccgctccctctctgcatccttt
aacagcaccatgatgatcaacccagacatccccgaggcacacaagctgagaggctggtat
gacaaggagggtcacgccatggatggtcagtccatgacggaggtgaaaggcggcggggga
ggaaacaccaactggaagactctgtctgacgttaagacggagcacctgggtcatggagaa
aaggcggactactacacatgcattgctaccattgtgtacctgcgtaaggagaactgcctc
taccaggcctgtcctagccaagactgcaacaaaaaagtggtagaccagcacaacggcatg
ttccgctgcgagaagtgcgacaaagagttccccaacttcaagtaccgcctcatcctttct
gccaacattgcagattacgcggacaaccagtgggtgacgtgcttccaggagactgcagag
tccatcctgggccagaacgcagcttacctggggcagctcaaggactcgaacgaagccgcc
tttgacgaaatcttccaacaagccaacttcaacacttttgtcttccgcagcagagtgaag
ctagaaacatataacgatgagtccaggatcaaggccacagcggtggaagtgaaacccgtt
gaccatttggattacagcaagaggttgatcatgaacataaggaaactggctgctcagtag
DBGET
integrated database retrieval system
