Trematomus bernacchii (emerald rockcod): 117469070
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Entry
117469070 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: neuronal PAS domain-containing protein 3
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117469070
Transcription factors [BR:
tben03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117469070
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
LicD
Motif
Other DBs
NCBI-GeneID:
117469070
NCBI-ProteinID:
XP_033969341
LinkDB
All DBs
Position
Unknown
AA seq
998 aa
AA seq
DB search
DPYWERPSNAGSCSAARPKTLHLAGQQQHTSSPWLQALRKEKSRDAARSRRGKENFEFYE
LAKMLPLPGAITSQLDKASIIRLTISYLKMRDFANGGDPPWNLRMEGAPPNTSVKAIGNP
RRRIPPAVASDVFEPHLGSHILQSLDGFVFAVNKDGRFLYISETVSIYLGLSQVELTGSS
VFDYIHPGDHAETADQLGMKLPPGRGLSLSQGNVNEDGASSASSSSHSETPEPVESSSPS
LLAPDKHLERSFFIRMKSTLTKRGVHIKSSGFKVIHVTGRLRIRMALTHSRSVPVQILGL
VVVAHALPPPTINEVRIDCQMFVTRVNLDLKIIYCENRISDYMDLTAVDIVGKRCYQLIH
AEDVEGIRECHLDLINKGQCVTKYYRWIQKNSGYIWIQSAATLTINTKNGNEKNVIWVNY
VLSNHEYKDFPMDIFQLPNLPEKTSESSESSDSESESKENSDNENAKSEGKPSLQSERED
PETDSKRQQQPGQSHCSSDQEMKRQEEGDSSSNPESQDSDDSLEPSDVEREEQEEANGGG
GGGGGGGGGGGNGGGRIGRLTGLVGLGGLGAIGGLGTLGGLHIKVERYGEGEDAQLHNSQ
TSSEEEEEEEDDDDDEEEEVLQDCDSANAGNRLQKRRKRRKVQKWDGPRSKRLRLSSMSP
SPNDLGDTTPLVDQSQTSSSANSSHLLTSAGSPTSASSSVLKIKTEMAEPINFDNDSSIW
NFPPNREISRNESPYSMTSKPAPPSSHESFPSPQGGIPESVLTPPGNDGGSGGGGRKPPY
NGNSSSSSSLAPPSSASSSDPLSPPLSASPRDKQQQQQGTPTTSSSSSSSSITSSSSLLY
SGDLEALQRLQAGNVVLPLVHRVTGTLASTSTTSPRVYTTGTIRYAPADVTLAMAQGNLL
PNAAMNFGDGSGFGLDPKTPMEMLYHHVHRLNMSAAAAAGGPFLGSPTSTVGNGALGGQM
PTAANVFTTAEGLFSTLPFPVYSNGIHTTQTTLERKED
NT seq
2998 nt
NT seq
+upstream
nt +downstream
nt
tgacccctactgggagcgaccctctaatgcaggcagctgctccgccgccaggcccaagac
gcttcacctggccgggcagcagcagcacacctcctcaccatggctgcaggctctgaggaa
ggagaagtcacgtgacgcggcgcggtcgcggcgggggaaggagaactttgagttttacga
gctggcgaagatgctgccgctgccgggcgccatcacctcgcagctggacaaagcctccat
catccggctcaccatcagctacctgaagatgagagacttcgccaacgggggagacccgcc
gtggaacctgcgcatggagggagccccgcccaacacctccgtcaaagctataggtaaccc
gcgaaggaggattccccccgccgtcgcctcagatgtcttcgaacctcacctgggcagcca
cattttacagtctctggacgggtttgtctttgcagtaaacaaagacggacgcttcctcta
catctctgagaccgtctccatctacctgggactgtcacaggtggagctaacaggcagcag
tgtgtttgactacatccaccctggagatcacgcggagacggcagatcagctcggcatgaa
gcttcctccgggccgaggcttgtctctttcccagggaaacgtcaacgaggacggggcctc
atcggcttcatcctcgtcccactctgagacgcctgaaccagtggagtccagcagtccctc
tctcctggcccccgacaaacatctggagcgatcgttcttcatcaggatgaagtccacgct
cacaaagagaggagtgcacatcaagtcctcaggattcaaggtgatccacgtgacggggcg
tctccggatcaggatggcgttgacgcacagtcgctcggtgccggttcagattttggggtt
ggtggtggtggcccacgctctgcccccccccaccatcaacgaggtgcgaatcgactgtca
gatgttcgtcacccgagtcaacctcgacctgaagatcatctactgcgagaacaggatcag
cgactacatggacctgactgcagtggacattgtggggaaaaggtgttaccagttaattca
tgctgaggacgtggagggaatcagagagtgtcatctggacctgataaacaagggtcagtg
tgtgacaaagtactaccggtggatccagaagaacagcggctacatctggatccagtctgc
tgcgacgctcaccatcaacaccaagaacggcaacgagaagaacgtcatctgggtcaacta
cgtcctgagtaatcatgagtataaagacttccccatggacatcttccagctgcccaacct
gcccgagaaaacctccgagtcctccgaatcctccgactccgagtccgagtctaaagaaaa
ctctgataacgagaacgccaagtcagaagggaagccgagcctccaatcagagcgcgagga
tcccgagacggacagcaagcgtcagcagcaacccggccaatcacactgctcctcagacca
ggaaatgaagcgtcaagaggaaggagacagttcgagtaatcctgagagtcaagacagcga
cgacagtcttgaaccttcagatgtagagagggaggaacaggaagaagcaaatggaggagg
tggagggggaggaggaggaggaggagggggaggaaatggaggaggaagaattgggagatt
aacaggattagttgggttaggaggattgggtgccattggaggacttggtactctgggtgg
gcttcatattaaagtagagcgctacggagagggagaagatgctcagctgcacaactcaca
aacttcttcagaggaggaggaggaggaagaggatgatgacgacgatgaggaggaagaagt
cttgcaagattgcgacagcgccaacgccggaaacaggctccagaagaggaggaaaaggag
gaaagtgcagaaatgggatggaccccgaagcaagaggctccgtctctcctcaatgtcgcc
tagtcccaacgatttaggagatactacgccactcgttgaccaatcccagacctcctcatc
tgctaactcctcccacctcctcacctccgctggatccccaacgagtgcgtcgtcctcagt
cctgaagatcaagacggaaatggccgagccgatcaacttcgacaacgacagcagcatctg
gaacttcccgcccaacagagagatctctagaaacgagtctccgtacagcatgacctccaa
accggcccctccctcttcccacgagagcttcccctcaccccagggaggcattcccgagtc
cgtcctcacccctcctggaaacgatggagggtccggaggaggagggaggaagcctcctta
caacgggaactcttcatcttcttccagcttagctcctccatccagcgcctcctcctccga
ccctctatcgcctcctctttccgcttcacctcgggataaacaacaacaacaacaaggcac
tccgacaacctcttcttcctcatcttcttcctccataacctcgtcctcctcgctgctgta
ctctggtgatctcgaggcgttacagcgtctacaagccggtaacgtcgtgctcccgttggt
ccacagggtcacgggaacgcttgcctcgacgagcaccacttctccacgagtttacaccac
cgggaccatcagatacgcacccgcggacgtaaccttggccatggctcaaggcaacctcct
cccaaatgctgccatgaactttggcgacggctccggctttggtttggaccctaaaacgcc
gatggagatgctttaccaccacgtgcaccggctcaatatgtcggcagcagcggccgccgg
tggtccgtttctcggatctccaacatccacggtgggaaacggcgctcttggaggccagat
gccgacggcagccaacgtgttcacgacggcggagggacttttctcaactctaccgttccc
agtgtacagtaatgggatccacaccacacagacaactctggagaggaaggaggattag
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