Trematomus bernacchii (emerald rockcod): 117469148
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Entry
117469148 CDS
T09643
Symbol
eif4a3
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
tben03015
mRNA surveillance pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117469148 (eif4a3)
09122 Translation
03013 Nucleocytoplasmic transport
117469148 (eif4a3)
03015 mRNA surveillance pathway
117469148 (eif4a3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117469148 (eif4a3)
03041 Spliceosome [BR:
tben03041
]
117469148 (eif4a3)
03009 Ribosome biogenesis [BR:
tben03009
]
117469148 (eif4a3)
03012 Translation factors [BR:
tben03012
]
117469148 (eif4a3)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117469148 (eif4a3)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117469148 (eif4a3)
mRNA cycle factors
Stress granule specific factors
117469148 (eif4a3)
Spliceosome [BR:
tben03041
]
Complex C
Other components
EJC/TREX
117469148 (eif4a3)
Ribosome biogenesis [BR:
tben03009
]
Eukaryotic type
90S particles
Helicases
117469148 (eif4a3)
Translation factors [BR:
tben03012
]
Eukaryotic type
Initiation factors
eIF-4
117469148 (eif4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
TniB
Motif
Other DBs
NCBI-GeneID:
117469148
NCBI-ProteinID:
XP_033969421
LinkDB
All DBs
Position
Unknown
AA seq
408 aa
AA seq
DB search
MAVAAVTSGGRKRLMREEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGVYAYGFEKPSA
IQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQ
KVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVFDMIRRRSLRTRAIKM
LVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKR
DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT
VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH
RIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcgccgctgtaacatcaggagggaggaagaggctcatgagggaggaggacatg
acgaaagtagagtttgagaccagcgaggaggtggatgtgacgccgaccttcgacacgatg
gggctgcgggaggacctcctgagaggggtctacgcctacggttttgagaaaccgtcagcg
attcaacagagagcgatcaaacagatcatcaaggggagagacgtcatcgcacagtcccag
tcaggaacgggaaagacggccaccttctgtgtgtcggtgctgcagtgtctggacatccag
gtgagggagacgcaggctctgatcctggctcccacccgagagctggccgggcagatccag
aaggtgctgctggctctgggagactacatgaacgtgcagtgccacgcctgcatcggggga
accaacgtgggcgaagacatccgcaagctggactacggacagcacgtggtgtcggggacg
ccagggcgcgtgttcgacatgatccggcgccgcagcctgaggactcgagccatcaagatg
ctggttctggacgaggcggacgagatgctgaacaaaggcttcaaggagcagatctacgat
gtgtaccgctacctgccccccgccacccaggtgtgtctgatcagcgccacgctgccccac
gagatcctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtgaagcgt
gatgagctgactctggagggcatcaagcagttcttcgtggccgtggagagagaagagtgg
aagtttgacacgctgtgtgacctgtacgacactctgaccatcactcaggccgtcatcttc
tgcaacaccaagagaaaggttgattggctgacggagaaaatgagggaggcgaacttcacc
gtgtcctcgatgcatggagacatgcctcagaaagagagagagtccatcatgaaggagttc
agatcaggagccagtcgggtcctgatctccacagacgtctgggctcgaggtctggacgtt
cctcaggtttctctcatcatcaactacgacctgcccaacaacagagagctctacatccac
aggatcggtcgttcgggtcgttacgggcgtaaaggtgtcgccatcaacttcgtgaagaac
gacgacatccggatcctgcgagacatcgagcagtattacagcacgcagatcgacgagatg
cccatgaacgtggccgacctgatctaa
DBGET
integrated database retrieval system
