Trematomus bernacchii (emerald rockcod): 117469428
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Entry
117469428 CDS
T09643
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117469428 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117469428 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117469428 (pcdh1a)
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117469428 (pcdh1a)
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117469428 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PDGLE
RET_CLD1
VWA_3_C
Syndecan
Motif
Other DBs
NCBI-GeneID:
117469428
NCBI-ProteinID:
XP_033969705
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MEPNVRLVLLWVLVLHCGSAEGGIMYRVQEEQPPNTLIGSLAADQGLPDSGHLYKLEVGA
PYLRVDGKTGDIFTTEIPIDRETLRDCRTLVKGKPCYLEFEVSVTDLIQNQSPRLIEGRI
EVQDINDNTPQFPSSVLTISVPENTIMGALFSIPLATDRDSDRNGVADYALTAGPDAATL
FGLQVADDRGGKLPQLIVLGNLDRELKDSYDLTIKAMDGGNPQRYSSALLRVVVTDANDN
SPKFERSTYEAEVSENSPPGHSVLQVKANDSDMGPNGEIEYTLHQALDPVSTLLRIDRST
GIIYVKGSLDREEISSLSFYVVARDKGPQPKSSKTFVTIEVTDQNDNAPVVEIRGIGLVT
HSEGVANISEDMPVGTAVALVQVSDKDEGENAMVTCVVAGDVPFQLRPASDSSIDSKRKY
FLQTTTPLDYERIRDYRVEIVAVDSGNPALSSQNSLKVQVTDVNDNSPIFSPTLFEVDFA
EENQPGEKVLDVIASDADSGTNAELLYSIVADSSIKGLFEIDPNTGTVRARSPLDREHKE
RYEFRVTAADKGSPVHKGTATVVINVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTV
LDVDKGENALIDLSVEPDGGKFVVQNGTGTILSSISFDREKESSYTFRLKAVDGGEPPRS
SYVAVTINVLDENDNNPVVTKPSNSSFRRLSPLASPDSHVEIVEAEDLDSGPNAELVFSI
SGGNPYQLFRISPSSGEITLAKEMTRKHGGLHRLVVRVSDRGKPARHATALVHIYVNDTI
SNVSLVEALVGHSLYTPLERDIAGDPDYGFAAQRSNILFGSLAGVAGVVMLILVVVFIRH
RIQRETKSGYQAGKKETKDLYAPKQAPKNAKGKRGRKGKPQKSPKPLGEDEEVSLQKSLK
FNLDGVNDSPRIHLPLTYSPGSPDIGRHYRSNSPLPSIQLQAQSPSASQKHQAVQDLPAA
NTFVGTGGDDNSTGSDQYSDYSYKTSQMKYSNKQHTHRRVTFSTTNPVQDLQDASQHSYY
DSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGETEHPENDIRSLPDVAMTGN
CTNECSELGHSDACWMPGHPSPVRKARNPPKLSTFVPYQERGSLGRLANGSARLGGEEPR
SRLPPSRSAYSNSGNDASQDCPLEEMPLSVASEFPPTPPSAHTPKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaaatgtacgactagtgctgttgtgggtcctggtgctgcactgtggttctgct
gagggtggcatcatgtacagggtccaggaggagcagccccccaacactctgattggtagc
ctggcagcagaccagggcctaccagactcaggccatctctacaagctggaggtcggggca
ccctacctacgtgttgatgggaagacgggggacattttcaccaccgagatacccatagac
agagagaccctgagggactgtcgaaccctggttaagggtaagccttgctaccttgaattt
gaagtatcggtgacggacctgatacaaaaccagagcccacgactgattgaaggacgcatt
gaggtacaggacataaatgacaacactccacaatttccctcttctgtcctcaccatctca
gtccctgaaaacacaatcatgggggcgctattctccatacctctggctactgacagggac
tcagacaggaatggggtggcggattatgctctgactgcagggccagatgcagcaacccta
tttggcttacaggtggctgacgacaggggggggaagctcccgcagcttattgtcctgggc
aacctagatcgcgagttaaaggattcctatgacctcaccatcaaggcaatggatggagga
aatccacagcgctacagcagtgctctgctgagagtggtagtcactgatgccaacgacaac
tctcccaagtttgaaaggtccacgtatgaggcggaagtgtccgaaaacagtccaccgggg
cactctgtgttgcaggtcaaagcaaatgactctgacatgggccctaatggagaaattgag
tacacccttcaccaagcactagacccagtgtcgacactcttacgaattgaccggtccacc
ggcattatctacgttaaaggatcccttgacagggaagaaatcagcagcttgtctttctat
gtggtggcgagggataagggtccacaacctaaaagctcaaagacatttgttacaattgag
gtgactgaccaaaatgacaacgccccagttgtggagattcgtggaattggtcttgtgaca
cacagcgaaggagtggccaacatttcagaggacatgccagttggaaccgctgttgcttta
gtgcaagtgtctgacaaggatgagggagaaaacgctatggtcacttgtgtagtcgcagga
gatgtgccgttccagcttcgccctgccagcgactcatccattgacagtaagaggaagtat
ttcctacagacaaccactcccctggactacgagaggattagggattaccgagtcgagatt
gtcgctgttgattctggaaatccggccctctctagccaaaattctctgaaggtgcaggtg
actgatgtgaacgacaactctccaatattctccccaacattgtttgaggtcgattttgcc
gaagaaaaccaaccaggggagaaggttttggatgttatagcttcagatgctgacagtggc
actaacgctgaactcctttatagtattgtggcagactcatccatcaaaggtctgtttgag
attgatccaaatacgggcacagtaagagcccgaagcccccttgatcgtgagcataaagaa
cgctacgagttccgggtcacggcagccgataaagggtcacctgttcataaagggacagca
actgttgtaataaacgtccttgaccgcaacgacaatgaccccaagttcatgctgagtggc
tacagcttttctgttttggagaacatgcctcctctcagtccagttggcatggtgacagtc
ctggatgtggacaaaggggagaacgccctaattgatctgtctgtagagcctgatggagga
aagtttgtcgttcaaaatggaacaggcaccattctttcaagcatctcgtttgacagggag
aaagaaagcagctatactttccgtcttaaagcagtggatggaggagagccccctcggtct
tcatatgtggccgtcacgatcaatgtactggatgaaaatgacaacaaccctgtggttacc
aaaccctccaattcctccttcaggcgtttgtcacctctagcttccccagatagccacgtt
gagatagtggaagccgaagacctggatagtgggcccaatgccgagctggtgttcagtatt
tctggcggaaacccttaccagttattccgcatttcaccgtccagtggggagatcactcta
gcaaaagaaatgacccgaaaacatggcggcctacatcgcctagtagtgcgagtgagtgac
agggggaagcctgcacgtcatgccactgccctggtccacatttatgtcaatgacaccatc
tcaaatgtcagcttagtggaggctctagtaggacacagtctttacactccactggaaagg
gacattgctggtgatcctgactatggtttcgctgcacagcgtagtaatattttgtttgga
agccttgccggagtggcaggtgttgtcatgttgatcctggtggtggtatttatccgacac
cgcatccagagagaaactaagagtgggtatcaggctggcaagaaggaaacaaaagactta
tatgcgcccaaacaagcaccaaaaaatgccaaaggcaaacgaggaaggaaaggaaagccc
caaaagtccccaaaaccactcggggaagatgaagaagtcagccttcaaaagagtctcaag
ttcaacctcgatggagtgaatgatagccccaggatacacctgcccttaacatattctcca
ggaagccctgatataggcaggcactaccgctccaactcccccttaccctccatccagctg
caggcccaatccccttcagcctcacagaagcaccaggctgtccaggaccttcctgccgcc
aacacctttgtaggaaccggaggagacgacaactctaccggctccgaccagtactcagac
tacagctacaagaccagccagatgaagtacagcaacaaacagcatacccatcgacgagtg
accttctccaccaccaaccctgtgcaggacctgcaggacgcctctcagcacagctactat
gacagcggcttggaggaatcggagactcccagcagcaagtcgtcgtctggtccccgcatc
ggacccctgaccctgcccgaggatcactatgagagaaccactccagatggcagcatcgga
gagaccgagcaccctgaaaacgatatccgctcgctccctgatgtggccatgaccggaaac
tgtacgaacgagtgcagcgagctgggccactcagacgcctgctggatgcccgggcatccc
tcccccgttcgcaaggccaggaaccccccgaaactctccaccttcgtgccttaccaggag
agagggagcctgggacgcctggccaacgggagcgccaggctggggggggaggagccccgg
tcgcgcctcccgccctcccgcagtgcctactccaacagcggtaacgacgccagtcaggac
tgccccttagaggagatgcccctgagcgtggcctctgagttcccgcccacccccccctcg
gcccacactccaaaaagggaaatttacctgtga
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integrated database retrieval system
