Trematomus bernacchii (emerald rockcod): 117469440
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Entry
117469440 CDS
T09643
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117469440
03015 mRNA surveillance pathway
117469440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117469440
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117469440
mRNA cycle factors
P-body specific factors
117469440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
117469440
NCBI-ProteinID:
XP_033969734
LinkDB
All DBs
Position
Unknown
AA seq
1299 aa
AA seq
DB search
MRGSFTRKPALMTDVCFATISSMPAERKRSLNMDEKDVCTFSNKDKEKERDGERRPSSAR
DKGKDEAKMSGKKDSSKEEKRKRLEEEKKKREEKDRKKKEEEKVKAEEEQKKKEEEEKKL
QEEQEKQLQEEEARKQREEEAALLKEKEESHQLHQEAWERHHCRKELRVKNQNAQEGRPE
EAFFSRLDSSLKKNTAFVKKLRTLTEQQRDSLSNDFGSLNLSKYIGEAVSSVVEAKLKIS
DVGCSVHLCSLFHQRYTEFAPLLLQAWKKHFEARKEEKAPNVSKLRTDLRFIAELTIVGL
FTDKEGLSLIYEQLKSIIGTDRDTHTHVSVVISFCKHCGDDIAGLLPRKVKAATDKFALS
FPPSEIIGTEKQQTFQNLLREYFTSLTKHLKKDHRELQNTERQNRRILHSKGELSEDRHK
QYEEFATSYQKLLANTQSLADLLDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGG
IWEDEDARNFYENLVDLKAFVPAILFKDNDKGKDKDEGKDGKDGKDGKEVKEAASTTEEL
ELELEALDIADEPLELEGPDEAESEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLP
NCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDV
GEDLCSMLKGDFRFHMRKKDQINIETKNKTVRFIGELAKFKMFPKTDTLHCLKMLLSDFT
HHHIEMACTLLETSGRFLFRSPESHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCN
PPPMEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVNI
WNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLG
ELYNYRMVESAVIFRTLFSFISFGINQDGSPSALDPPEHLFRIRLVCTLLDTCGQYFDRG
SSKRKLDCFLIYFQRYIWWKKSTEVWTNDHPFPIDIDYMISDTLELLRPKMRLSSSLEEA
TKHVSDLEREVLFKLGLAMEKDGRLSAMSEGEVLDEEDDEGDDDEDVETEEQSGNESEMN
EQEEDDGSENELEEREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDF
IQALDKMMLENLQQRSGETVKVHQLDVAIPLQLKSQLKKSGSREPVIGGEENEISDTMQF
VMLTRKGNKQQYKILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEM
MASLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgagagggtccttcacacggaaaccagcgctaatgaccgatgtttgttttgctacaatt
agcagtatgcctgctgaacgcaaacgctcattaaacatggatgaaaaagatgtttgcacc
ttcagcaacaaggacaaggagaaggagcgagatggtgagaggagaccatcgtccgcccgg
gacaaaggcaaagacgaggccaagatgagcgggaaaaaagacagcagcaaggaggagaag
aggaagcgcctcgaggaggaaaagaagaagagggaagaaaaggatcgtaagaagaaagag
gaggaaaaagtgaaagcggaggaggagcagaagaagaaagaggaagaggagaaaaaactg
caggaggagcaggagaagcaacttcaggaggaggaagccaggaaacaacgagaggaggag
gcagctctcctgaaggagaaggaggagagccatcagctgcaccaggaggcctgggagcgc
catcactgcaggaaggaactccgcgtcaagaaccaaaacgcccaggagggtcgacccgag
gaggctttcttcagccgcctggactccagcctgaagaagaacacggccttcgtgaagaag
ctgcgaacgctcaccgaacagcagcgcgactcgctctccaacgacttcggctccctgaac
ctcagcaagtacatcggcgaggcggtgagctccgtggtggaggccaagctgaagatctcc
gacgtgggctgctccgtccacctctgctcactcttccaccagcgctacaccgagttcgct
ccgctgctcttacaggcgtggaagaagcactttgaggcgaggaaggaggagaaggcgccc
aacgtgagcaagctgcgaacagacctgcgtttcatcgccgagctcaccatcgtcgggctt
ttcacagacaaggaggggctttctctgatctacgagcagctgaagagcatcatcgggacg
gaccgcgacacgcacactcatgtgtcggtggtcatcagcttctgtaagcactgcggggac
gatatcgccgggctgctgccccgaaaagtgaaagcggccactgacaagttcgctctgagc
ttccctccgagcgagatcatcggcacggagaagcagcagaccttccagaacctgctgagg
gaatacttcacctcgctcaccaaacacctgaagaaggaccaccgcgagctgcagaacacc
gagaggcagaacaggcgtatcctacattccaaaggggagctgagtgaggaccgacacaaa
caatatgaagagtttgcgacttcctaccagaagctgctggccaacactcagtctctggcc
gacctgctggacgaaaacatgcccgaccttcctcaggacaagacggtgcaggaggagcac
ggccctgggatcgacatcttcacccccgggaagcccggagagtacgacctggaaggcggg
atctgggaagacgaagacgctcgtaacttctacgagaacctggtggacctgaaggccttc
gtgcccgccatcctcttcaaggacaacgacaagggcaaagacaaggatgaaggcaaagac
gggaaagacgggaaagatgggaaggaggtgaaggaggcagcgagcaccacggaggaactg
gagctggaactcgaggctctggacatcgcagacgaacctctggagctggagggacccgac
gaggcggagagtgaagagctggccaagaaactgctggatgagcaagaacaagaggatgaa
gaggccaacacggggtctcacctgaagctgattgttgacgccttcatccagcagctgccc
aactgtgtcaacagagacctcatagacaaggcggccatggatttctgcatgaacatgaac
accaaatccaaccggaggaaactggtcagagcgctcttcaccgtgcccaggcagaggttg
gacctccttcccttctactctcgcctggtggccactctccatccctgcatgtcggacgtg
ggggaggatctgtgctccatgctgaagggagacttcaggttccacatgcgtaagaaggac
cagatcaacatcgagaccaaaaataaaacggtcagatttatcggagaactggccaagttc
aagatgttcccaaagactgacacgctgcactgtctcaagatgctgctctcagatttcacc
catcaccacatagagatggcgtgcacgctgctggagacgagcggacgcttcctcttcaga
tcccccgagtcccacctgcgcaccagcgtcttactggagcaaatgatgcgtaagaagcag
gctcagcacctggacgcccgctacgtgacgatggtggagaacgcctactactactgcaac
cctccgcccatggagaagacggtgaagaagaagcggccgccgctgcaggagtacatccgg
aagcttctctacaaggacctgtccaaggtgaccacggagaaggtgctgcggcagatgagg
aagcttccctggcaggaccccgaggtgaagagctacctgatctgctgcatggtgaacatc
tggaacgtgaagtacaacagcatccactgcgtcgccaacctgctggcgggcctggtggcg
taccaggaggacgtcgggatccacgtggtggacggggtgctggaggacatccggctgggc
atggaggtgaaccagccgaagttcaatcagcggcgcatcagcagcgctaagttcctcggc
gaactttacaactaccgcatggtggagtcggcggttattttccggaccctcttctccttc
atctctttcgggataaatcaggacggcagccccagcgctctggatcctccggagcatctg
ttccggatccggctggtttgcactctgctcgatacctgcggacagtactttgatcgaggg
tcaagcaagaggaaactcgactgcttcctcatctacttccagcgctacatctggtggaag
aagagcaccgaggtttggaccaacgatcacccgttccccatcgatatcgactacatgatc
agtgacaccctggagctgctgaggcccaaaatgaggctcagcagctccttggaggaggcc
accaaacacgtgtccgacctggagagggaggtactctttaaactgggtctggcgatggag
aaggacgggcgcttgagtgcgatgagcgaaggcgaagttctggacgaggaagacgatgaa
ggcgatgatgatgaagacgtggagacggaggagcagtcgggcaacgagagcgagatgaac
gaacaggaggaggatgacgggtctgagaacgagttagaagagagggaggaggaggaagag
gagaacaccgactacctgaccgactccaacaaggagaacgagacggacgaggagaacaac
gaggtgacgattcgtggcggaggattaaaacacgtcgcctgcgctgaagacgaggacttc
atccaggctctggataagatgatgctggagaacctgcagcagcgcagcggggagacggtg
aaggttcaccagctggacgtagcgatccctctgcagctgaagagccagctgaagaagagc
ggctccagagaacccgtcatcgggggggaagagaacgagatctctgacaccatgcagttc
gtcatgctgacacgcaaaggcaacaagcagcagtataagatcctgaacgtgccgctgtcc
tcccacctggcggcgaatcacttcaaccagcagcaggcggagcaggaggagaggatgagg
atgaagaagctgacgctggatatcaacgagaggcaggagcaggaggactaccaggagatg
atggcgtccctggctcagcgccccgctccggcgaacaccaacagggagcgccggcctcga
taccaacacccgaaaggcgctcccaacgccgacctcatcttcaagaccggaggaaggtga
DBGET
integrated database retrieval system
