Trematomus bernacchii (emerald rockcod): 117469560
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Entry
117469560 CDS
T09643
Symbol
cltca
Name
(RefSeq) clathrin, heavy chain a (Hc) isoform X1
KO
K04646
clathrin heavy chain
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04142
Lysosome
tben04144
Endocytosis
tben05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117469560 (cltca)
04142 Lysosome
117469560 (cltca)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
117469560 (cltca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117469560 (cltca)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tben04147
]
117469560 (cltca)
Membrane trafficking [BR:
tben04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
117469560 (cltca)
Exosome [BR:
tben04147
]
Exosomal proteins
Proteins found in most exosomes
117469560 (cltca)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
117469560
NCBI-ProteinID:
XP_033969894
LinkDB
All DBs
Position
Unknown
AA seq
1679 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQSQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDASKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAASFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRLAVRNNLAG
GEELFARKFNNLFAAGTYSEAAKVAANAPKGILRTPDTIRRFQGVPTQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKAVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRINPEQGLQFAQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRPHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNYFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLTTQSLTELFESFKSFEGLFYFLGSIV
NFSQDAEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLRENPF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPDLWASV
LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYISRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKDLVKEAIDSYIKADDPSAYME
VVQAADKSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYMRSVQSHNNKSVNEALNNLFITEEDYLALRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDVELAEELLSWFLQ
EDKKECFAACLFSCYDLLRPDVVMETAWRHNLMDFSMPYFIQVMREYLSKVDKLETSETV
RKEEEQATETQPIVYGTPQLMLTAGPTVPVAPQQPYGYGYQAPAGFAPPAAQPGFGYGM
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgcctattcgctttcaggagcacctgcagctccaaaatttagggatc
aatccggccaacataggcttcagcaccctgaccatggagtcggataagttcatctgtatc
cgggagaaagtgggcgagcagtctcaggtggtgatcatcgacatggcagaccccaacacc
cccatccgcaggcccatctccgccgacagcgccattatgaatccagccagcaaagtcatt
gcacttaaagacgcctccaaaacccttcagatcttcaacatcgagatgaagagcaagatg
aaggcgcacaccatgacggacgatgttaccttctggaagtggatctcccttaacacagtc
gcacttgtgactgataatgccgtctaccactggagcatggagggcgactcacagcctgtg
aaagtcttcgaccgccactccagcctggcaggctgtcagatcatcaactaccgcacggac
gccaagcagaaatggctcctgctcatcggcatctcagcccagcaaaatcgggttgttgga
gccatgcagctctactccgttgacagaaaggtttcccagcccatcgaaggccatgctgcc
agctttgcccagttcaagatggaggggaacacagaggagtcaactttgttctgcttcgct
gtccgaggccaggctggaggaaagttgcacatcattgaagtggggaccccaccaactggc
aaccagccatttccaaagaaagcagtggatgtgttcttccctccagaagcccagaacgac
ttccctgtggccatgcagataagctccaagcaagatgtggttttcctcattaccaaatat
ggctacattcacttgtatgacttggagacgggtacctgcatctacatgaaccgcatcagc
ggggagaccatctttgtgactgctccacatgaggccaccgcaggaatcatcggggtcaac
aggaagggacaggtgctctcagtgtgtgtggaagaggaaaacatcatcccctacatcact
aacgtgctccagaatccagatctggctctccgcttggctgtccgcaacaacctcgctggt
ggagaagagctctttgcacgcaagttcaacaacctgtttgccgccggtacctactctgag
gctgccaaggttgctgcaaacgcaccaaagggtatcctgcggaccccagacaccatccgt
cgctttcagggcgttcccacccagccggggcagacctcccccctgctgcagtacttcggc
atcctgttggaccagggccagctcaacaagtttgagtccctggagctctgcaggccggtc
ctccagcaggggcgcaagcagctcctggagaagtggctgaaggaagacaagttggaatgc
tcggaggagctgggtgacctggtgaaggcagtggatcccacgttggctctcagtgtctac
ctgagggccaacgtccccaacaaagtcatccagtgcttcgcagagactggtcagttcccc
aagatcgtcctgtacgccaagaaggtgggctacactccagactggatctttctgctcagg
aatgtgatgcggatcaacccagaacaaggcctgcagtttgcccagatgctggttcaggat
gaggagccgctggccgacatcacacagattgtggatgtcttcatggagtacaacctgatc
cagcagtgcacctcgttcctcctggacgctctgaagaacaacagaccctcagaaggacca
ctgcagactcgcctgctggagatgaacctcatgcatgctccacaggttgctgatgctatc
ctgggcaaccagatgttcaccaactacgatcgtccacacatcgcccagctgtgtgagaag
gctggactccttcaaagagcgctggagcactacaccgacctgtacgacatcaagcgcgcc
gtggtgcacacacacctgctcaacccagagtggctggtgaactactttggctccctgtcg
gtggaggactctctggagtgcctcagggccatgctgtccgccaacatccgccagaacctg
cagatctgtgtccaggtggcttccaagtaccacgaacagctcaccacacagtccctcact
gagctctttgagtccttcaagagctttgaaggtctgttctacttcctgggctctattgtt
aacttcagtcaggacgctgaagttcacttcaaatacatccaggccgcctgcaagaccggc
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgacccggagcgcgtc
aagaacttccttaaggaagccaaactcaccgaccagctgccactcatcatcgtctgtgac
cgctttgactttgtccacgacctggtgctctacctgtaccgcaacaacctgcagaagtac
atcgagatctatgttcagaaggtgaatcccagccgcctgcctgttgtggtcggtggtctc
ctggatgttgactgctcagaggatgtcatcaagagtctgatcctggtcgtcaggggacag
ttctctaccgatgaactggtcgctgaggtggaaaagaggaacagactgaagctgctgctg
ccctggctggagtctcgtatccacgaaggctgtgaggagcccgccacccacaatgccctg
gctaagatctacatcgacagcaacaacaaccctgaacgcttcctgagggaaaaccccttc
tacgacagccgtgtggtgggaaagtactgcgagaagagagacccccacctggcctgtgtg
gcctacgagagaggacagtgtgaccaggagctgatcaatgtctgcaatgagaactccctg
ttcaagagcttgtctcgctacctggtgcgccgcaaagaccctgacctgtgggccagcgtg
ctgctggagaccaaccccttcagaagaccactcattgaccaggtggtgcagacagcgctg
tcagagacccaggacccagaggaggtgtccgtcacagtcaaggccttcatgaccgcagac
ctgcccaacgagctcatcgagctgctggagaagattgtgctggacaactctgtcttcagt
gaacacagaaatctgcagaacctgctgatcctaaccgcaatcaaagccgaccgtacccga
gtgatggagtacatcagcaggctagacaactatgacgcccccgacatcgctaacatcgcc
atcagcaacgagctcttcgaggaggccttcgccatcttcaagaagtttgatgttaacacc
tccgctgtgcaggtgctgatcgaacatattggcaacctggaccgggcctatgagtttgcg
gagcgctgcaatgagcctgccgtgtggagccagctggctaaggctcagctccagaaggac
ctggttaaagaggccatcgactcctacatcaaagccgacgatccctctgcatacatggag
gtggtgcaggctgctgataagagcggaaactgggaggacctggtgaaattcctgcagatg
gctcgtaagaaggcccgcgagtcctacgtggagacagagctcatctttgccttggccaag
accaaccgcctggcagaactggaggagttcatcaacggacccaacaacgcccacatccaa
caggtgggtgaccgctgctacgacgagaaaatgtacgatgccgcgaaacttctctacaac
aacgtctccaacttcggtcgtctggcttcgactctggtgcacctcggggagtaccaggcc
gctgtggacggcgcccgcaaggccaacagcacccgcacctggaaggaggtgtgcttcgcc
tgcgtggacggaaaggagttccgactggcccagatgtgcggtctccacatcgtggtgcac
gctgacgagctggaggagctcatcaactactaccaggaccgcgcttactttgaggagctg
atcaccatgctggaggccgccctgggcctggagcgcgctcacatggggatgttcacggag
ctcgccatcctgtactccaagttcaagccgcagaagatgagggagcacctggagctcttc
tggtccagagtgaacatcccgaaggtcctgagagcagcggagcaggcgcacctgtgggcc
gagctggtcttcctgtacgacaagtacgaggagttcgacaacgccatcatcaccatgatg
aaccaccccacagacgcctggaaggagggccagttcaaagacattatcaccaaggtggcc
aacgtggagctgtactacaaagccacacagttctatctggagttcaagcccttgttactg
aatgatttgctcatagtgctttcccccagactggaccactcccgtgccgtcaacttcttc
agcaaggtgaaacagctgcctctggtcaaaccctacatgcggtcagtacagagccacaac
aacaaatcagtcaatgaagcacttaacaacctcttcatcacagaggaggactatctggca
ctgaggacatcaatagacgcctacgacaactttgacaacatctccctggcccagcgcctg
gagaagcacgagctgatcgagttcagacggatcgctgcgtacctcttcaagggcaacaac
cgctggaaacagagtgtggagctgtgcaagaaggacaagctctacaaggacgccatgcag
tacgcgtcggagtcgaaggacgtggagctggccgaggagctgctgtcctggttcctgcag
gaggacaagaaggagtgtttcgccgcctgcctgttctcctgctacgacctgctgcggccc
gacgtggtgatggagaccgcctggaggcacaacctcatggacttctctatgccatacttc
attcaggtcatgagggagtacctcagcaaggttgacaaactagaaacctcagagactgta
aggaaagaggaggagcaggcaacagagacgcaacccatcgtctacggcacaccccagctg
atgctgacggcgggccccaccgtccccgtggctccccagcaaccgtacggctacggctac
caggcccccgcaggcttcgctccgccagctgctcagccaggctttggctacggcatgtaa
DBGET
integrated database retrieval system
