Trematomus bernacchii (emerald rockcod): 117469659
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Entry
117469659 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-1-like
KO
K16498
protocadherin delta 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117469659
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117469659
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117469659
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117469659
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117469659
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
PDGLE
ApeA_NTD1
Motif
Other DBs
NCBI-GeneID:
117469659
NCBI-ProteinID:
XP_033970011
LinkDB
All DBs
Position
Unknown
AA seq
1018 aa
AA seq
DB search
MAALRREVLLFFSVVLLVSCGASPTDILYRVPEEQPPNTLIGSLASDQGLPDTGHLYKLE
VGSPYLRVDGKSGDIYTTEIPIDRETLKDCRNLFEGDKCFLEFEVSITDMVNGLGSGPRL
IEGRIEVLDINDNTPQFSSPILTLSIPENTHIGALFSIPMATDRDSGHNGVAEYTLSTGP
DADQLFSLQVALDSDEKLPQLVVMGNLDREMKDSYDLNIRVVDGGIPPRASSALLRVTVT
DQNDNAPKFERSHYEAELQENSPQGHSVLQVRANDADTGTNGEIDYSLHQASEAVQRLLR
IDRSTGVIYVKGLVDREEESFLKFFVYAKDRGPNSKSSKVVVTINVRDQNDNSPAIEIRG
IGLVTHHNGVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASESSND
RKRKYFLQTTTLLDYENIKYYLIEIVAVDSGNPALSSSNSLKVQVTDINDNTPTFSPSRV
EVDFAEGNQPGDKVLVITAADADSGSNEELVYSIIDLHANRLFEIQSNSGEIRVKNMLDR
EETEQYEFRVAAADKGIPSKTGTATVVINVLDRNDNDPKFNAAVYSFSVIENMLPLNPVG
VVTVTDADKGENARVRLYVEPDNGXIIIQNGTGTILSSISFDREKESTYSFRLKAVDAGD
PPRSSYVGVTINVLDENDNAPYVTKPANSSYKYMSTRHPPLDTRVEVVEAEDIDSGPNAE
LVNTITGGNPYDLFYISPNSGEITLVEEFTGKHNGLHRLVVKVSDKGKPPRHTTALVHVF
VNDTKSNVSLIEHLLDTVSTPPLDRDIAGDPNYALAQRSNILYGSLAGIAGVIMVIVAVV
VIRHRLQKDTKSGYQAGKKESKDLYAPKQGPKNGKGKKIKKGKAPKPAKPVEEDEEASLQ
KGLKFNLINENVNDSPRIHLPLNYPPGSPDLGRPTASNSPLPSIMLXPQSPSASKKHQAV
QDLPATNTFVGTGDNTSTGSDQYSDYSYKANPPKYSSKQVGDYANTYQRDIYWTNRVW
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttgaggcgggaagttctgcttttcttttcggtcgtcctgctggtgtcctgc
ggcgcctcgcccaccgacatcctgtaccgagttcctgaagagcagccgcccaacacgctg
atcggcagcctggcgtcggaccagggtcttcccgacaccggacacctttacaaactggaa
gtgggatcgccgtacctacgagtggacggaaaatccggcgacatctacaccaccgagatc
cccatcgaccgcgagacgttgaaggactgccgcaacctgttcgaaggagacaaatgcttc
ctggagttcgaggtgtcgatcacagatatggtgaacggtctcggatcgggaccccggctg
atcgaggggcgcattgaggttctggacatcaacgataacacgccgcagttctcctcgccc
atcctcaccctctccatccccgaaaacacacacatcggcgccctcttctccatccccatg
gccaccgatagagactctggacacaacggggtggcggagtatactctgagcaccggaccg
gacgcagaccagctcttcagccttcaggtggctttggattcggatgagaagttaccacag
ctggtggtcatgggtaatctggaccgcgagatgaaggactcgtacgacctgaacatccgc
gtggtggacggagggataccgccgagggcgagcagtgccttgttgagggtgaccgtcacc
gaccagaacgacaacgcaccaaagtttgagaggagtcactacgaggcggagcttcaggag
aacagcccccagggacactcggtgctgcaggtcagagcaaacgatgcagacaccggaacc
aacggagagattgactacagcctccatcaggcatctgaggcagtccagaggcttctgcgg
attgaccggtctacgggcgttatctacgtcaaggggctggtggaccgcgaggaggaaagc
ttcctcaagttctttgtgtacgccaaagatcgtgggcccaactccaagagctccaaagtc
gtggtgaccatcaacgtcagggaccagaacgacaactcccctgccatcgagatccgtggt
atcggtttggtgacgcaccacaacggggtggccaacatctctgaggacatgcccatcggc
acacctgtggcgttggtccaggtgtcggaccgtgacgagggggaaaatgcagtggtgacg
tgcgtggttgccggtgacgtcccctttcagctccgacctgcaagtgagtcctccaacgat
cggaagaggaagtacttcttgcagacaactaccttgctggattatgagaatattaagtat
tacctgattgaaatagtcgctgtggattctggaaaccctgccctgtccagcagcaactcc
ctcaaagtacaggtcacagacattaatgacaacacgccaaccttttccccttcacgagtt
gaggtggacttcgcagagggcaaccagccaggtgacaaggtgctggtcatcacggcggca
gatgcagacagcggctctaacgaagagctggtctacagcatcatcgacctccatgccaac
aggctctttgaaatccaatccaactctggagagatccgtgtgaagaacatgctggatcga
gaagagacggaacagtatgagtttcgagtggcggcagctgacaagggcattcctagcaaa
actggcactgctaccgttgtgattaatgttctggaccgcaatgacaatgacccaaagttt
aatgctgcggtctacagcttctccgtcattgagaacatgcttccactgaatcctgttggt
gttgtgaccgtcactgatgcagataagggtgagaacgcccgggtgaggctgtatgtggaa
ccggacaatggtnaaattatcatccagaacggcacaggaaccatcctgtccagcatatcc
ttcgaccgtgagaaggagagcacctactccttccggctgaaggctgtagatgctggtgac
ccacctcgatcctcctatgttggggtgactatcaacgtcctggacgagaatgacaatgct
ccctacgtcaccaaaccagctaactcctcctacaagtacatgtccacccgtcaccccccg
cttgacacccgtgtggaggtagtagaggctgaagacattgactctggacccaatgctgag
ctagtcaacaccatcacaggcggcaacccgtacgacctgttctacatctcgcccaacagc
ggagagatcacactggtggaggagttcaccggcaaacacaacgggcttcatcgcctggtg
gtgaaagtcagcgataaaggcaaacctcctcgccacaccaccgccttagtccacgttttt
gtcaatgacaccaagtccaatgtgtccctcatcgagcacttgttggacacagtctctaca
ccccctctggacagggacattgccggagatcccaactacgccctcgctcagcgcagcaac
atcctgtatggcagcctcgcaggtattgctggtgtgattatggtcattgtcgcggtggta
gtaatcagacaccgactgcagaaggacaccaagagtggctaccaggccggcaagaaggag
agcaaggacctttacgctcccaagcaaggccccaaaaatggcaaagggaagaagatcaaa
aagggaaaagctcccaaaccggcgaagccagtggaggaggacgaggaggccagcctgcag
aaaggcctcaagttcaacctcatcaacgaaaatgtaaatgatagtcccagaatccacttg
ccccttaactacccaccgggaagccccgatctgggacgtcctaccgcctctaactcccct
ctaccctccatcatgctgncgccacagtcgccctccgcctccaagaagcaccaggctgtt
caggacctccccgccaccaacaccttcgtgggaacgggcgacaacacctcaacaggctcc
gaccaatattcggattacagctacaaggccaacccccccaaatacagcagcaaacaggta
ggagactacgcaaacacgtaccaaagggacatctattggaccaaccgggtgtggtag
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