Trematomus bernacchii (emerald rockcod): 117469688
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Entry
117469688 CDS
T09643
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117469688 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tben03400
]
117469688 (lig3)
Enzymes [BR:
tben01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117469688 (lig3)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
117469688 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
117469688
NCBI-ProteinID:
XP_033970042
LinkDB
All DBs
Position
Unknown
AA seq
1025 aa
AA seq
DB search
MQRPLVLLYKKTVSAGFQPLGTLVRCQPLWKGSRNLSVPSYFKQIPPTVHAFNISRQNHN
FSLVSRVLQKDYFRLSLQQFFSEMADQKFIVEYAKRGTAGCKKCKEKIMKGIVRIGKVVP
NPFSESAGEMKEWYHSKCIFEKMEKARATTKKIEDITDLEGWEELQDEDKEAINKHVSDL
MAKVNSTPKKKVQTKLNASGQTMAPPSDPTLNAPRKFSGFTATKAGSSSSPGPSSSSSSP
SSSSPSQGSALSSQLCDRNHKDCLLREFRKLCATVAEHNSYNTKTQIIEKFLRKGSAGDK
FHGDLFLTVKLLLPGVVKSVYNLNDKQIAKLFSRIFKCNQDDMVRDLEQGDVSETVRMFF
EESKSFPAASKSLLTIQEVDASLTRLALLTKEDEQQIELEEISKKCTGNDLKCIIRLIKH
DLKMNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDATNGSGPRKLLTVEASLM
TPVQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDIFSYFSRSLKPVLPHKV
AHFKEFIPQAFVGGENMILDAEVLLIDTNTSKPLPFGSLGVHKKTAFQDAKVCLFVFDCI
YFNGVSLMERPLSERRKFLRDNMVEVPNRILFSEMKHVTRAGDLADMITRVIREGLEGLV
LKDLKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLLGCYDP
HSKKWCTVTKCSGGFDDAMLARLQKELDMIKISKEPSKIPGWIKVIKNYYPDFIIRDPQK
APVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLEQLRELFRISKENCDF
KVTAGPSANDGKGSSGDSGGSSPSSSSHGAPPPKKTNPRTPKPKPIKSEPRTPGYDTPSA
KKVKVEVKVEKEVKMEKMEKEVKTESVHSNGKTQNKPTAQILKPRNDKTLLDIFSGVKLF
LPSSVQDFDKLRRYFVAYDGDLVADFEVSMATHTLGAPGDDSSAHKVTPSWIWECIRKRR
VVPAC
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaccgctcgttttattatataaaaagactgtctctgccggctttcagcctctt
ggcacacttgtcaggtgtcagccactctggaaagggtctagaaacctctctgtcccttca
tactttaaacaaatacccccaactgttcatgcatttaacatttcccggcaaaaccacaac
ttttccttagtatcccgagtcctgcaaaaagattatttccgtctttctttgcaacaattt
ttctccgagatggcagaccagaagttcatcgtggagtatgccaaacgtggcactgcagga
tgtaagaagtgcaaggagaagattatgaaggggatagtgcgcatcgggaaggtcgttcca
aaccccttcagcgagtctgcaggagaaatgaaggagtggtatcactccaagtgtatcttt
gagaagatggagaaagccagagccaccaccaagaagatcgaggacatcacagacctggag
ggctgggaggagctgcaggacgaggacaaggaggccatcaacaaacatgtctcagacctg
atggccaaagtcaactcgaccccgaagaagaaggttcagacgaagctgaacgcgtcgggt
cagacgatggctcctccttccgaccccacgctcaacgctccacgcaagttctcaggcttc
accgctacgaaggccggcagctccagcagcccgggtccttcctcctcttcctcttctccc
tcctcttcctcgcccagccaaggcagcgctctgtcctctcagctgtgcgaccgcaaccac
aaggactgtctgctcagagagttcaggaagctctgtgccacggtggccgaacacaacagc
tacaacaccaagacgcagatcatcgagaagttcctcaggaagggctccgccggagataag
ttccacggagatcttttcctgacggtgaagctgctcctgccgggcgtcgtgaaaagtgtc
tacaacctgaacgacaagcagatcgctaaactcttcagccgcatattcaaatgcaaccag
gacgacatggtgcgcgacctggagcagggcgatgtgtctgagacggtgcggatgttcttc
gaggagagtaaatcgtttcctgcggcgtccaaaagcctcctcaccatacaggaagtggac
gcctcgctgacccgcctcgcgctgctgaccaaggaggacgagcagcagattgagctggag
gaaatctccaaaaaatgcaccggtaatgacttgaaatgcataattcgccttataaaacac
gacctcaagatgaattctggagctaaacacgtcctggacgctgtggatccaaacgcttac
gatgccttcaaggcctctcgtaatctgggagacgtgatcgagcgggtgttgaggaaccag
caggacgcgactaacggctccggaccccgaaaactcctcactgtggaggcatctctcatg
acccccgtgcagcccatgctggcagaggcatgtaaatccatcgagtacgccatgaagaaa
tgtcccaatgggatgtactcggagatcaaatacgacggagaacgtgtgcaggtccacaag
aacggagacatcttcagctacttcagccgcagcctgaagccagtgctgccacacaaagtg
gcacatttcaaggagttcatccctcaggcgttcgtgggaggcgaaaacatgatcttagac
gctgaggtgcttctgatcgacaccaacactagcaagcctctgccctttgggagcctggga
gttcacaagaaaacggccttccaagatgccaaagtgtgcctttttgtctttgactgcatc
tacttcaacggcgtgagtctcatggagaggcctctgagtgagcgcaggaagttcctgcga
gacaacatggtggaggttcccaacaggatcctgttctcagagatgaagcacgtcactagg
gcgggagatctggcagacatgatcactcgagtcatcagagagggactggagggcctcgtg
ctcaaagacctgaagggcacgtatgagccggggaagcgtcactggctgaaggtgaagaag
gattatctgaatgaaggagcgatggccgacaccgcggacctggtggtgctgggagctttc
tacgggaagggatcaaacgggggcatcatgtccagtttcctgctgggatgttacgaccct
cactctaagaagtggtgcaccgtcactaagtgctccggcggcttcgatgacgccatgttg
gctcgactccagaaggagctggacatgatcaaaatcagcaaggaacccagcaaaatcccc
ggctggataaaagtcatcaagaactattatccagatttcattatccgggatcctcagaaa
gctccggtctgggagatcaccggcgcagagttttccaaatcagaaatgcacacggctgac
ggcatctccatccgattcccccgcatgacgcgcatccgagacgacaaggactggaagacc
gccaccaacctagagcagctcagggagctgttccgcatctcgaaggagaactgtgacttt
aaagtaacggccggaccctcggctaacgacgggaagggatcctcaggagacagcggagga
agctccccctcctcatcctcacatggagcccctccacccaagaagaccaaccccaggacc
cccaaaccaaagccgatcaaatctgagcctcgcactcctggatacgacactcccagtgcc
aagaaggtgaaggtggaggtgaaggtggagaaggaggtgaagatggagaagatggagaag
gaggtgaagactgagagcgttcacagtaacgggaaaacacaaaacaaaccaacggctcaa
atcctgaagcctaggaacgataagacgctgctggacatcttcagcggcgtgaagctcttc
ctgccctcctcggtgcaggacttcgacaaactgaggcggtacttcgtggcgtacgacgga
gacctggtggccgacttcgaagtctccatggcaacgcacacgctgggcgcccccggcgac
gacagctcggctcacaaagtgacgcccagctggatctgggagtgtatccgcaagaggcgt
gtcgtccctgcctgttga
DBGET
integrated database retrieval system
