Trematomus bernacchii (emerald rockcod): 117469915
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Entry
117469915 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: protein SMG7-like
KO
K14409
protein SMG7
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117469915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117469915
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
117469915
mRNA cycle factors
Common to processing body (P body) and stress granule
117469915
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
117469915
NCBI-ProteinID:
XP_033970281
LinkDB
All DBs
Position
Unknown
AA seq
1113 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPSRV
KSSQLGIISNKQSGSSIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV
PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT
KWSVSDFIRAFIKFHGHVYLSKSLDKLDALREKLEEQFQKLILQKAFSSQQLVHITVINL
FELHHLRELPSEGGEPSCSEQPISWFQLLGLFMSFLGVMCSRALLNKSRGEEIMGECPLP
AIKVSLDWLRLRPSVFHEAAVDQRTHIWPWLVSILNSFQPKEDDVTCPSVTPLPEEFELQ
GFLALRPALRSLDFTKGHQGILVDRDGLPLQTRHQRLISLGKWVADNQPGLIQCSVSEDG
LLLFITDIPEQAIEEPLEKEKEAPVLQESSNAEQQPNDGLGNSGLKSVLSAGKTQSSWPD
GGERPVVTFKENIKPREPSRSQQLKDSGKERRDFNKGNGVAAGKTEPKRERDGKRKSEMK
KAPHEKTADAGKQVKAQTELRKTPVSEAKKTPVTQTQTQTQTQFIPIHHPGAFPPLPSRP
GFPPSAYVIPPPVGFPGLQVNPGFTFSSGVSVPPFLQAGVLSQQGVQGGGKPSHIPYSQQ
RPSGPPQGPGASGGQQQLQVQAMNQNQNHQQQQQSPTKPGGQQMGKSPPHHPGLQQYMQE
QPAQMWSQAQAALQNLSPMQMSMKQPPPPQQGFYMTPDPLKMYEHQLQPPAPPPQLSMDK
KMKFPSVKMQDFYWEPSYRMGEGLAVMADRMKRAPPGGMCSEQEGQQGPRGPPFELPNQN
RMESGPEVVGQSSSLLPMSGFPMQEYNQNSIFSQAYGKSLPPSSKPEAPMMHQEPSLYSL
FEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGAMPFSNFGPIGTPDSRDR
RVVDRWKADKTGFGLDFLPAPASSGSDSSWHQAPPPGSSWANQESPMEESSTVLLDSLKS
IWSGSMLQTGPSALEQLLQQQKQKQRGAMNPPH
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccagtatctacgacaggcagaggccctgaaggcggacatgacagat
tcgaagctgggcgcggccgaggtgtggacgtcgcgccaggcgctgcaggacctgtaccag
aagatgctggtgaccgacctggagtacgctctggacaaaaaggtggagcaggacctgtgg
aatcatgcctttaagaaccagatcaccacgctgcagagtcaggccaagaaccgagccaac
ccaaaccgcagcgaggtgcaggccaacctgtctctgttcctggaggcagccagcggcttc
tacactcagctgctgcaggagctgtgcacggtgttcaacgtggacctgccgtctcgcgtg
aagtcctctcagctcggcatcatcagcaacaagcagagcggcagcagcatcgtcaccccg
cagcccagctcctgctcctacatctgccagcactgcctcgtgcacctgggagacatcgca
cggtaccgtaaccagacgagtcaggcggagtcgtactacagacacgccgctcagctggtc
ccgtctaacggccagccgtacaaccagctggccatcctggcctcctctaaaggagaccac
ctgaccaccatcttctactactgccgcagcatcgccgtcaagttccccttccctgcagct
tccactaacctgcagaaggctctgtccaaggctctggagagccgagatgaagtgaaaacc
aagtggagcgtctcagatttcatcagagccttcatcaagttccacggccacgtctacctg
agcaagagtctggataaactggacgctctgagggagaaactggaggagcagtttcagaag
ctcatcctgcagaaggccttcagctctcagcagctggttcacatcacggtcatcaacctg
ttcgagctccatcacctcagagagctgccgtctgaaggaggggagccgagctgcagcgag
cagccaatcagctggttccaactgctggggctcttcatgtccttcctgggcgtcatgtgc
agccgagctctgctcaacaagagtcgtggggaggagataatgggcgaatgtcctcttccc
gccatcaaagtgtctcttgattggctcagactgagacccagcgtcttccacgaggccgcc
gtcgaccagaggacgcatatctggccctggctcgtctccatcctcaacagtttccagccc
aaagaggacgacgtgacctgcccctcagtgacgcccctgccggaggagtttgagctgcag
ggtttcctggcgctgcgtcccgctctcaggtccctggacttcactaaaggacatcaagga
atccttgtggaccgggacgggctgccgctgcagacccgccaccagaggctcatcagcctg
gggaagtgggtcgccgacaaccagccgggtttgatccagtgcagcgtgagtgaagatggt
ctcctcctcttcatcaccgatatccccgagcaggccatcgaggagccgctggagaaagag
aaggaggcgccggttcttcaggagtcgtctaacgccgagcagcagcccaacgacgggtta
gggaactccggtttgaagtctgtgctttcagcggggaagacgcagagctcgtggcccgac
ggtggagaacggcccgtcgtcaccttcaaggaaaacatcaaaccccgagagccgagtcgc
agtcagcagctgaaggacagcgggaaggagaggcgagacttcaacaaggggaacggggtt
gctgctgggaaaacggagccgaagagagagagagacggcaagaggaagagcgagatgaag
aaagccccgcacgagaaaacagccgacgccgggaaacaggtgaaggctcagacggagctg
aggaagactccagtgtccgaggccaagaagacacctgtcactcaaactcagacccagacc
cagactcagttcatccccatccaccatccaggagccttcccccccctacccagcagacct
ggtttccccccctctgcctatgtgatcccccccccggtgggcttccctggtctgcaggtg
aaccccggcttcaccttctcctccggggtctccgtgccccccttcctgcaggcgggggtg
ctcagccagcagggggtccaggggggtgggaagccgtctcacatcccctacagccagcag
agaccctcaggaccccctcagggaccaggagcctcgggggggcaacagcagctgcaggtc
caggccatgaaccagaaccagaaccaccagcagcagcagcagagccccaccaaaccaggg
gggcagcagatggggaagagccccccccaccacccagggctgcagcagtacatgcaggag
cagccggctcagatgtggtctcaggcccaggcggcgctgcagaatctgtctccgatgcag
atgtccatgaagcagcctccccccccccagcagggcttctacatgacccccgaccccctg
aagatgtacgagcaccagctgcagccccccgccccccccccgcagctctccatggacaag
aagatgaagttccccagcgtgaagatgcaggacttctactgggagccgtcctacaggatg
ggagaggggctggcagtgatggccgaccgcatgaagagggccccgccgggggggatgtgc
tccgagcaggagggccaacaggggccccgcggacccccgtttgagctgcccaatcagaac
cggatggagagcggccccgaggttgtcggccaatcatcttctctgctgcctatgtctggg
ttccccatgcaggagtacaaccagaacagcatcttcagtcaggcgtacgggaagagcctg
cctcccagctccaagcccgaagctcccatgatgcaccaggagccgtcgctctactccctg
ttcgagggcacgccctggtccccctccctccccgccagctcagatcactccacccctgcc
agccagtccccccactcctctaaccccagcagcctgccctcctccccccccacccacaac
cacggagccatgcccttctctaacttcgggcccatcggcactccggacagccgggaccgc
agggtagtggaccgctggaaggccgacaagaccgggttcggactggacttcctgccagcg
ccggcctcttcggggtccgacagcagctggcatcaggccccaccccccggcagctcctgg
gccaatcaggagtctccgatggaggagtcgtccacagtgctgctcgacagcctcaagtcc
atctggtccggctccatgctgcagacgggcccctcggctctggagcagctcctccagcag
cagaagcagaagcagcgcggcgccatgaacccgccgcactga
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integrated database retrieval system
