Trematomus bernacchii (emerald rockcod): 117470313
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Entry
117470313 CDS
T09643
Name
(RefSeq) Down syndrome cell adhesion molecule-like protein 1 homolog isoform X1
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117470313
Cell adhesion molecules [BR:
tben04515
]
Immunoglobulin superfamily
DSCAM family
117470313
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
C1-set
Pur_ac_phosph_N
Ig_6
V-set_CD47
fn3_2
ChitinaseA_N
DUF1461
Motif
Other DBs
NCBI-GeneID:
117470313
NCBI-ProteinID:
XP_033970934
LinkDB
All DBs
Position
Unknown
AA seq
2079 aa
AA seq
DB search
MWLVTLLLLYSLQEVNSEDVVSTRLYFVNASLQRVTFSSSVGVSLPCPAGGAPHAVLRWY
LAAGDDIYDVPHIRHVHANGTLQLYPFSPSAYNSIIHDNEYFCTAENQAGKIRSPSIHIK
AVFREPYTVRVADERSMRGNVAVFKCLIPSAVQEYVSVVSWEKDTVSIVPGNRFFLTSFG
ALYFSEVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPTESTPSVLDSFQSGEVQMG
HSVELPCVASGYPNPTIRWMKDGRPLPADSRWTRRITGLTVSDLRLEDSGNYICEVTNSF
GSKEVTGHLNVIDPLRVTLSPKNLKTGISSTVILSCAVQGSPHFMVSWYRNTESVLPDQH
FSIQGAHNETLFISAAQKRHSGAYQCFATRKGQTAQDFSIILLEDGTPRIVASFSERVVV
PGEPFSLMCAAKGAPPPTITWTLDDEPVARDLSRVRASQYTLSDGSTVSHVNVSSPQIRD
GGVYRCAARNSAGSAEYQARINVRGPPRIRPMKNITAVAGRNSFINCRVIGYPYYSINWY
KEGLLLPDNHRQVVYENGTLKLSDVQKGMDEGAYVCSVLIQPQLFITQTVYITVKVPPLI
QPFDFPPTSIGKLMYIACVVSSGDMPIRITWRKDGQEIVASSGITIDTKEFMSSLQISKV
SLKHNGNYTCIASNDAATVSTERQLTVTVPPRFVVQPNNQDGIYGKAGILNCSVDGYPPP
KVMWKHAKAALAGIGNPQQYHPVPLTGRIQIMGNGSLLIRHVLEEDRGFYLCQASNGVGS
DISKSMVLTVKIPAMITSHPNTTMAKKGHLKELNCTARGEWPIIIRWERGDTVIDPDRNP
RYSIITSPNEKTDEVLSTLKLKPAEREDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPEL
EVREVKDRSMNLRWTQRFDGNSVITSYDIEYKNKTDTWELKHATRNISPSNNQANIVDLH
PASVYSIRMYSYNSIGKSEASKELTISTEEAQPDGPPMEVILQPVTSQSIRVTWKAPRKE
LQNGVIRGYQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG
TGPSSSEINATTLEDVPSQPPQNVRAISVTSDEAVITWAEPPRMTLHGVLKGYRVVFWAV
FPDGEWGEMQNITTIKEQVELKGLEKFTNYSIQVLAYTQAGDGVRSNVLYIQTREDYPGP
PAGIKTVPSSSSSVVVSWLPPHKPNGIIRKYTIYCSSPGSGQPLPSEYEANPELLFYRIT
HLNHRQQYLIWAAAVTTAGRGNFSEKVTVEPASKAPAKILSFGGTVTTPWMKEVRLPCSS
VGEPTPTIKWTKDSEDTAIPVSLDGQRLILTNGTLVLRAVKAEDSGYYTCTATNTLGFDT
IIVNLVVQVPPDQPRLTVSTTSISSITLAWIPGDNGGSSIRGFVLQYSVDNTEEWKDVFI
SSSERSFKLDNLRCGTWYKVKLAAKNSVGAGRISEIIEAKTHGREPQFNKDQPVFTHLNS
SHARLNLQGWVSGGCPINAVILEFRPKGTWAWQNVRTNATADVFLAELREATWYELKMKA
CNSAGCGNQSSQFATLDYDGSTIPPIKSPLEKNDDVKKLFSIGCPVILVTLGVALLFIIR
RKRKEKRLKRLRDAKSLAEMLISKNNRSFDTPVKGPPQGPRLHIDIPRVQLLIEDKEGIK
QIGEDKATIPVTDTEFNQTGNPQSFCTGVSVHHPALIQNTGPLIDMSDIRPGTNPVSRKS
VKSAHSIRNRYSSQWTLTKCQSSTPARALTSDWRTVGSQHGITVTESDSYSASLSQDTDK
GRNSMVSTESASSTYEELARAYEHAKLEEHLQHAKFEITECFISDSSSDQMTTGTNDNAD
SMTSMSTPSEPGICRFTASPPKPQDYDRGKNVAVPIPHRAKSDYCNLPLYMKSDPFFRKQ
SEHHDPCPVVPPREASIRGLAQRAYHTQGRHVTMDSVKQQALTMGHSGLSNLSSSGGATG
ACGGGASASSSSSTLPQRTLTMPGSSASMAQSAAAAAAATAAAAAFSSSGATGGTPGGAS
SKMGGSRDSLLESSSSGLGRLQKQRDGGAGAYSKSYTLV
NT seq
6240 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttgtaactttacttctgctgtattctttgcaagaagtcaacagtgaggatgtt
gtctctacgcggctgtactttgtgaatgcctccctgcagcgggtgaccttctccagctcg
gtgggggtgtccctgccctgccctgcgggcggcgccccccatgctgtcctgcgctggtac
ctggctgccggagacgacatttacgacgtgccccatatccgccacgtgcacgccaacggc
accctccagctctacccattctccccctccgcctataacagcattatccatgacaacgag
tatttctgcactgctgagaaccaagctggcaagattcgtagcccaagcatccacatcaaa
gcagtgttcagggagccctacacagtgcgagtggccgacgagcgctccatgcggggcaat
gtcgccgtgttcaagtgcctcatcccctcagccgtccaggagtacgtcagcgtggtgtcc
tgggagaaagacaccgtctccatcgtcccaggtaaccgtttcttcctgacgtcatttggc
gctctgtatttctcagaagtgcagaaggaagatgctctgtccacctaccgctgcatcaca
aagcacaagtacagtggagagactcgccagagcaatggagccaggctctctgttatggac
cctacggagtccaccccctcagtgctggatagtttccagtccggtgaggtgcagatgggg
cacagcgttgagctgccctgtgttgcatccggatacccaaaccccaccatccgatggatg
aaggatggtcggcctttacctgctgactcccgctggacacggcgcatcaccggcctcacc
gtttccgacttgaggcttgaggacagtggcaactacatctgtgaggtcaccaacagcttt
ggctccaaagaggtgacgggtcatcttaatgtcatagatccactgcgggtcaccttgtct
cccaagaacctgaagacggggatcagcagcacagtcatcctatcctgtgccgtccagggt
tccccgcactttatggtgtcctggtaccgtaacactgaatctgtcctgcccgatcagcac
ttttccatccagggggctcacaatgagacattgttcatttccgccgcacaaaagagacac
tcgggagcttaccagtgctttgccacgcgcaagggccagaccgcccaggacttctccatc
atactgctggaagatggtacgccccgtattgtcgcctccttcagtgagagggtggtggtc
cccggtgaacccttttccctgatgtgcgctgccaaaggagcgcccccccccaccatcacc
tggaccctggacgacgagcctgtggcccgggacctgtcgcgtgtccgagccagccagtac
acgctctccgacggcagcactgtgagccacgtcaacgtcagcagcccgcagattcgcgat
ggaggagtgtatcggtgcgccgcacgaaactcggccggtagtgccgagtaccaagcgcgc
ataaacgtaagaggtccaccgaggattcggcctatgaagaacatcactgcagtggcagga
agaaactctttcataaactgccgtgtgattgggtacccttattactcaatcaactggtac
aaggaggggcttctgctgcctgacaatcatcgccaggtggtttatgagaatgggaccctg
aagctcagcgatgttcagaaggggatggatgagggggcctacgtctgcagcgtgctcatc
caaccacagctgttcatcacgcagactgtctatatcaccgtcaaagttcctccactgatc
cagccatttgactttccacccacttccatcggtaaactgatgtacatcgcctgcgtggtg
tcgtctggagatatgccaatacgcatcacatggcgcaaggacgggcaggagatcgtggcc
tcctcgggcatcaccatcgacacaaaggagttcatgagctctcttcaaatatccaaagtg
tcgctcaaacacaatggcaactacacctgcattgctagcaacgatgctgccactgtcagc
acggagaggcagctcacagttacagtgcctcctcggtttgtggttcagcccaacaatcag
gatgggatctatgggaaggcagggatcctaaactgttcagtagatgggtaccctcctcca
aaagtcatgtggaaacatgccaaagctgcactagcgggtattgggaatccgcagcagtat
caccctgtgcctctgacgggccgtatccagatcatgggtaacggctctctactcatccga
catgtcctggaagaggatcggggcttctacctctgtcaggcctccaatggcgtgggctca
gacatcagcaagagcatggttcttaccgttaagatccccgcgatgatcaccagtcacccc
aacaccaccatggctaagaagggtcacttgaaggagctgaactgcacagccaggggagaa
tggcccatcatcatccgctgggagagaggcgacacagtcattgaccctgaccgcaacccc
cgatactccattatcaccagtcccaacgagaagacggacgaggtgttgtctacgctcaag
ctaaagccagcagagcgtgaggattcagtcttcttctcatgtcatgctatcaactcttac
ggcgaaggacgaggccttatccagctcactgtgcaagagcccccagaccctccagagttg
gaagtgcgagaagtgaaagatcgcagtatgaatctacggtggacacagagatttgatgga
aacagtgtcattacctcgtacgatattgagtataagaacaagacagatacctgggagctg
aagcatgcaacccgaaacatctcccccagcaacaatcaggccaacatcgtggacctgcac
cccgcctctgtctacagcatccgcatgtactcctataactcgataggcaagagcgaggcc
agcaaggaactcaccatcagcacagaggaagcacagcctgatggtcctcccatggaggtg
atcctgcagcctgtgacctctcaaagtatcagggtcacatggaaggcccccaggaaggag
ctgcagaacggggttatcaggggttaccagattggatacagagagaacggcccgggcagt
aacggccagtacagcattgtggagatgaaggccactggagacagtgaggtctacaccctg
gacaacctgaagaagtttgctcagtatggtgtggtggtccaggccttcaacagagccggc
acaggaccctccagctcagagatcaatgccacaacactggaagatgttccaagccagcct
cctcagaatgtgcgagccatttctgtaacatcggatgaggcagtgatcacatgggccgag
cctcccaggatgacgctgcatggcgtgttgaagggataccgcgtcgtcttctgggctgtg
tttccggacggagaatggggtgaaatgcaaaacatcacaaccatcaaggagcaggtggag
ctcaaaggcctggagaagttcaccaactacagcatccaggtcctggcctacacccaggct
ggagatggggtccgtagcaacgtcctgtacatccaaacccgtgaagactaccccggaccc
ccggctggcatcaaaactgtgccctcttcctccagcagtgtcgtggtgtcctggttaccc
cctcacaagccaaatggaatcatccgcaagtacaccatctactgctctagccccgggtcc
ggccaaccgctgcccagtgagtatgaagctaatccagagctgctgttctaccggatcaca
cacctcaaccaccggcagcagtacctgatctgggcggcagccgtcaccaccgcaggtcga
gggaacttcagcgaaaaggtcactgtggagccggcgtccaaagccccggctaagatcctt
tcatttgggggcacagtgacgaccccctggatgaaggaggtgcgactgccctgtagctca
gtaggagaacctacacctaccatcaaatggaccaaagacagtgaggacacagccatccca
gtgtctctagatggacagcggctcatcctgaccaatgggacactggtgctgcgtgcggtc
aaagctgaggattctgggtactacacctgcacggccaccaacacgctgggcttcgacact
atcattgtcaaccttgtggtacaagttcctcctgaccagcctcgtctaaccgtctccacc
acttccatctcctccatcactctggcctggataccaggagacaacggagggagctctatt
agaggtttcgtgttgcagtactctgtagacaacacagaggaatggaaagatgttttcatc
agttctagtgaacgctccttcaaactggacaacctgcgctgtggcacctggtataaagtg
aagctggctgcaaagaacagtgtgggagccggacgcatcagtgagataatcgaagcaaag
acccatgggcgagaaccccagttcaacaaggatcagccggtcttcacccaccttaactcc
agccacgcccgcctcaacctgcagggctgggtcagtggaggctgtcccatcaacgctgtc
atactagagtttagaccaaaaggtacatgggcatggcagaatgtgcgcaccaatgccaca
gcagatgtgttcctggctgagcttcgtgaggcgacctggtatgagttgaagatgaaagcc
tgcaacagtgctggctgtggcaaccagagctcccagtttgcaaccctggactatgatggc
agtacaattccaccaatcaaatcccctctggaaaagaacgatgatgtcaagaagctgttt
tctattggatgtcctgtgatcttggtcactctgggtgttgcgctgctcttcatcattcgc
aggaaacgcaaagaaaagaggctgaagagactaagagatgccaaaagcctggcagagatg
ctgatcagtaaaaacaaccgcagctttgacaccccagtgaagggacctcctcagggccca
cgcttacacatcgacatcccccgagtgcagctgctcattgaggacaaggaaggcatcaag
caaattggtgaagacaaagccactatccctgtgacagacacagagttcaaccaaactgga
aaccctcaaagcttctgcacaggtgtgtccgtccatcatcccgccctcatccagaacacc
ggtcctttgattgacatgtcagacatcagaccaggaaccaacccagtttcgaggaagagc
gtaaagtcagcccacagcatcaggaaccgatactccagtcagtggactctgaccaagtgc
cagtcctccacgccagcccgcgctctcacctcagactggcgcacagttggctcccagcat
ggcatcactgtcaccgagagtgacagctacagcgccagcctctcacaggacacagataag
ggtcgcaacagcatggtgtcgacagagagcgcctcttcaacctacgaggagttggcgaga
gcatacgagcatgccaagctggaggaacacctgcagcatgccaagtttgagattactgaa
tgctttatctctgacagctcctctgaccagatgactacaggtaccaacgacaatgcagac
agcatgacgtccatgagcactccctcagagcccggtatctgccgcttcactgcctcaccg
cccaaaccccaggactacgatcgtggcaagaatgtagctgtgcccattccacaccgcgca
aagagtgactactgcaaccttcccctctacatgaagtcagatcccttcttccgaaagcag
tccgagcatcatgacccctgtccagtggtccccccacgtgaagcctccattcgtggcctg
gcccagcgggcataccacacccagggccgtcatgtgactatggactcggtaaagcagcag
gccctaaccatgggccactctggcctgtccaacctctcttcctctggaggggcaacagga
gcctgtggtgggggtgcgtctgctagctctagcagctccaccctcccccagaggactctc
accatgccaggctcctctgcctccatggcccagagtgcagcggccgctgctgctgccact
gctgcagccgctgcattctcctcctcaggggccacaggagggactcctggaggggcctcc
tccaagatgggaggatccagagactctctcctggagagcagctcctcgggcttaggcaga
ctgcagaagcagagagatggaggggccggggcctactccaagtcgtacacactggtgtag
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integrated database retrieval system
