Trematomus bernacchii (emerald rockcod): 117470337
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Entry
117470337 CDS
T09643
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04270
Vascular smooth muscle contraction
tben04625
C-type lectin receptor signaling pathway
tben04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
117470337 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
117470337 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
117470337 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117470337 (arhgef12a)
Membrane trafficking [BR:
tben04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
117470337 (arhgef12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
117470337
NCBI-ProteinID:
XP_033970964
LinkDB
All DBs
Position
Unknown
AA seq
1433 aa
AA seq
DB search
MSDTQSSFTDRFPKKANRSSSILSKDHPPDKKPKSDKTSLPSNEFDPTEALVVQKSGSSS
VLAEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIK
VNGTLVTHSNHIEVVKLIKSGSYVALTVLGRPPGLAQIPLSEAESEMLGVSISSPNSPAT
ERPYSPLDRLSSTQSPWDENSSVCNQKVDMLQRMLSKEQQELQAMKEEYSRNPSPKLLKD
IQEVKKHIPQLQGQILKASGASQEAVPGGDADDEREHTPASKGDNSTELSWRNSPISRIF
GPGSPESLYQRGSSCPSPKSTARNSFNSCHSPEAEDTTDLDSLSPTTVSSPTSARLVSQI
IGAEDDYFDSDQEQTNGQCNSFNNIEQLKSRPAHLAAFLHHVFSQFDPAPVLCYLYADFY
KQTNSKETRRVFMDFHNFFIASGANLKVAVPESISMDLDRRRTELIPEEINRQHVQTLQD
SLLPEIQKNLEDFRQKRSMGLTVAEVELSRLDQEGVRDRVTLERERSYAENIITKIEDIL
LTTHTTEEERCTTMQYVIYTYMKLLGVRVKEPRSLESKRVRINFLPKIKKSIKTEKEGEE
KVKKPRFPSILGPQRRPSRVETTSVGKALEGRPRPQKQLSQPSLGAADHMEAGRLRGSQS
SEGSELTHSMSVNTSSPNSATYSSDTSRDADMGGTPTSGPSRLSDGLQTDPLDGLVHFDL
YSHDPLQEDDRESDRAHEGTPKTIRRIEGLLAADVQSEDDQGTDSEHDPPNWQQLVGREV
LAGLRPQEIKRQEVINELFYTERAHVRMLRVLDHVFFQKLSKESILPPADIKNIFTNLDE
ILQLHASILEQMAAVRKRNESSVIDQIGDDLLSWFGGGEEEKIKKAVGTFCSNQPFALEI
IKTKQKKDSRFTSFVQEAESNRQCRRLQLKDIIPVEMQRLTKYPLLLENIAKYTDNTVEK
DKVKQAADCCRKILNHVNQAVKESEDKQRLEDYQRRLDLSSLKQTDNPVILELKNLDLTK
RTMVHEGPLSWKVNKDKTIELYTLLLQDILVLLQKQDERLILKCHSKNLAGTADTKHIFS
PIIKLNTVLVRSVATDHKSFFVLSMSENGAQIYELMAPTVSDQKTWQRLITQRADAMKVK
PHSVIPLPQTDGERDGVETITAGVSRLSRDADRTSTGSTQSTDKESSPAPRSVTSSLPGN
NPFEGVKAEEEEEEEGFVDPELPYRVAENVKEGDSFNRFPSRADEALKTLAALKQVLVTQ
LMSQEALEQTKRSTGARLLRTTSLRTPVDSRARVMVHNGSEKNSSQTEDPAQDLGSGDTG
FFDSPEDYAGYLVLEGYGGPGESSTDDDILASNTGKQLRSSQGCAADSGINLRFSSASQA
GSLSSFSRQVLSHLRNLQANLNYLKDVEAKYNNVIRQRPERSAADTDGNKDKR
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacacacagtccagcttcactgacaggtttcccaagaaagcaaacagatccagc
agcattctcagtaaagaccaccccccggacaagaaacccaaaagtgacaaaacctcactt
ccctccaatgagtttgaccctacagaagctctggtggtgcagaagagtggcagcagcagt
gtgctagcagaggggaagcctgagtcctgtggtctggtccagcgatgtgtaatcatccag
aaagatgaaaatggctttgggctcactgtcagcggtgacaacccagtgtttgtgcagctt
gtcaaagaagatggggctgctatgcgggccggtgttcagacaggagacaggatcatcaag
gttaacgggacccttgttacacattctaatcacatagaggtggttaagctaatcaaatcc
ggctcctatgtggccctcacagtattggggcgtcctccggggctcgcccagatccccttg
tctgaagcagagtctgaaatgttgggcgttagtatttcctctccaaactccccagcaaca
gaacgcccctacagtcctctggaccgcctctcctccacccagtcaccatgggatgaaaat
agcagcgtctgcaaccagaaggttgacatgctgcaaaggatgctctccaaagagcagcag
gagctgcaggccatgaaggaggagtacagcaggaacccctcccccaaactactgaaagac
atccaggaagttaagaagcacattcctcagctgcaggggcagatcctcaaggccagtggg
gcttcacaggaggctgttccaggtggtgatgcagacgatgagagggagcacactcccgcc
tctaagggagacaacagcacagagctgtcctggagaaactctcctatatctcgcattttc
gggcctggatctccagagagtctctaccaaagagggtcatcctgccccagccccaagagc
accgccaggaacagcttcaactcctgccactccccggaggccgaggacaccactgacttg
gactctctgtctcctaccacagtcagcagtcccacttccgctcgccttgtctcgcaaatc
attggagctgaggacgactattttgattcagaccaggagcagacgaatggccagtgtaac
agctttaacaacatcgagcagctcaagtctcgtcccgcccacctcgcagcgttccttcac
cacgtcttctctcagttcgaccctgctcctgtgctgtgctacctctatgctgacttctac
aagcagaccaactccaaagaaaccagacgggtgttcatggacttccacaacttcttcatt
gccagtggagcaaatctgaaagtcgctgttcctgaatccatctctatggatctcgaccgg
cggcggacagaactgatccctgaggaaataaacagacaacacgttcaaacgctgcaggac
tctctgctcccagaaatacagaagaaccttgaggatttcaggcagaagcgcagtatgggc
ctcaccgtggctgaagtggagctgtcccgactggaccaagagggagtcagagaccgggtc
actctggagcgagagcgttcatacgcagagaacatcatcaccaagatagaggatatcctg
ttaactactcacacaacagaggaggagagatgcactacaatgcagtatgtcatctataca
tatatgaagctccttggtgtgagggtcaaggaacctcgcagtctggagtccaaacgggtc
aggatcaactttcttcccaagatcaagaaaagcatcaagacagaaaaggagggagaagag
aaggtgaagaaacccagatttcccagtatccttggacctcagcgtcggcctagccgtgtt
gaaacaacatcagtgggaaaagcgttggaaggtcgcccccggccgcagaaacaattatct
cagccttcattgggggcagctgatcacatggaagctggccgtctgcgaggcagccaatcc
agcgagggttctgaactcacacactcaatgtctgtcaacacctcgtccccaaacagcgcc
acctacagctcagacacgagcagagacgctgatatgggtgggactccgacctcaggcccc
tccaggctgagtgacggccttcagacggaccctcttgatgggctggtgcactttgacctt
tacagccatgacccgctgcaagaggatgacagagaaagcgacagggcccacgagggaaca
ccaaagaccataagaaggattgagggactgcttgcagctgacgttcagagcgaggacgac
cagggaacggactcagagcacgaccctcccaactggcagcagctggtggggcgagaggtc
ctagcaggtctcaggcctcaggaaatcaagagacaggaagtcatcaatgagctgttctat
acagagcgtgcgcatgtgaggatgctgagagttttggaccatgttttcttccagaagctc
tccaaagagtccatcctgcctcctgcagacatcaagaacatcttcactaacctggacgag
attctacagctgcatgcttcaatactggagcaaatggcagctgttcggaagagaaatgag
tcttcggtaattgatcagataggagacgacttgctctcctggttcggcgggggagaggag
gagaagatcaagaaggcggtggggacgttctgcagcaaccagccttttgctctggaaatc
atcaaaaccaagcagaagaaggactcgcgctttacttccttcgtccaggaggcagagagt
aacagacagtgtcgccgactgcagcttaaagacatcattcctgtggagatgcagcggctc
accaagtaccccctgctgctagaaaacatcgccaagtacacagacaacacagtggagaag
gacaaagtgaagcaggcggcagactgctgcagaaagatcctcaatcacgtcaaccaggct
gtgaaggaatctgaggacaagcagaggctggaggactatcagagaagattggacctctcc
tctctgaagcagacagacaaccccgtgatccttgagctaaagaatttggatttaaccaag
agaaccatggtgcatgagggaccgctgtcatggaaagtgaacaaggacaagactatcgag
ttgtacacactcctcctgcaggacattctggtcctgctacagaaacaagatgagcggctg
atcctgaagtgtcacagtaaaaacctggccggcacggcagacaccaaacacatcttcagc
cccatcatcaaactcaacactgtgctggtgcgctctgtggcaacagaccacaagtccttc
ttcgtcctgtccatgtcagaaaacggagcccagatctatgagctgatggcgcccacagtc
tcagatcagaaaacgtggcagcgtctaatcacccagagagctgatgccatgaaagtcaaa
cctcacagcgtcataccattacctcagactgatggggagagggatggagtggagaccatc
acagcgggggtttccaggctgagtcgagatgcagaccgcacgtccaccggcagcacccag
tccacagataaagagagcagtccagcccctagaagcgtgacgagttctctaccaggtaat
aatccatttgagggagtaaaggcagaggaagaagaggaggaggaaggttttgtggaccca
gagcttccttaccgagtggctgaaaatgtcaaagaaggagactcgtttaacaggtttccc
tccagagcagatgaagcactgaaaacattggcagcattaaagcaggtgttggtgacccag
ctgatgtcccaggaggccttggagcaaaccaaacgctccacgggggctcgtctcctcagg
accacctcgctgcggacccccgtggacagccgagcgcgggtgatggtccacaacggctca
gaaaagaacagctcccagacagaggaccccgctcaggacctgggctctggagacacgggc
ttctttgattctcctgaagattatgcagggtatttagtcctggaggggtacggcggccca
ggggagagcagcacagacgatgacatcctggcatcaaacacagggaagcagctgagatcc
tcacagggctgcgccgccgactcgggcatcaacctgaggttttcttcagcgtcacaggcc
ggcagcctctcctctttcagcagacaggtcttgtctcaccttagaaaccttcaggccaac
ctcaattatctgaaggacgtcgaggccaagtacaataatgtaatacgccaaaggccagag
aggtcagcagcagacacggatggaaacaaagataagagatag
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integrated database retrieval system
