Trematomus bernacchii (emerald rockcod): 117470614
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Entry
117470614 CDS
T09643
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117470614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117470614
03036 Chromosome and associated proteins [BR:
tben03036
]
117470614
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117470614
Coactivators
SAGA/TFTC/STAGA complex
117470614
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
117470614
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
117470614
NCBI-ProteinID:
XP_033971318
LinkDB
All DBs
Position
Unknown
AA seq
657 aa
AA seq
DB search
MPVTGGSVILAPPPPAMALKPAMNGVAVVRPPGAPVMVRPPGTPVMVRPPGNPVVTVAPS
LQQQRPGLVAPGRATAPQLAVRPQQQQTTIQLPPGFSMPPGMVLVRTETGQLVMVPQQVL
AQAQAKTQQGGGAIIHRPATPTAGTTVRVTTASTAPQTVRLASPAQTRMVQSTSTVQKTI
SVAPGGAMVTVKMPPPQKGPTVITGNKPSPPTLSTPAPPARGPLLSTEMQENVKKCKNFL
ATLIKLASHNSPSPDTSKNVKALVQDLLDAKIEPEEFTTRLQAELKSSPQPYLIPFLKKS
LPSLRQSLLTNQQNLMASTSAPPIISTSIRPRLPISPGATTVRLNTPLVGVRAGVPARSP
VVFNQTLRPQGTLIRGPTTIIGRSPLNVAPANQRKLSDPGGGTFRDDDDINDVASMAGVN
LNEENARILATSSELVGTKIRSCKDEAFLPPGPLLKRILDSAKQQGVLEVPPEVVALISH
ATQARLRALLEKVSSIAQHRSEGGKEDEQECMSDVRSQLRFFEHLERLEKQRKDDQEREI
LLKAAKSRARQEDPEQARLKLKAKEMQQNELAQMRQRDANLTALAAIGPRKRKKMDSPGG
SSAPEVVSGPGSSPGSSSSRQQLRQRITRVNLRDFIFCLETDRITARSLTLYKALLK
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgactgggggctcagtgatcctggcgccccctcccccagcgatggccctgaag
ccggctatgaacggggtggcagtggtgaggcccccgggagcccccgtgatggtgaggccc
ccggggacccccgtgatggtgaggcccccagggaaccccgtggtgacggtggccccctcc
ctccagcagcagaggcccgggctggtggcccccggcagagcgacggccccccagctggct
gtgaggccccagcagcagcagaccaccatccagctgcccccagggttcagcatgccccct
gggatggttctggttcgtacggagacgggtcagctggtgatggttcctcagcaggttctg
gctcaggctcaggccaagacccagcaggggggcggggccatcatccatagaccggccacg
cccactgcagggaccacggtccgggtcaccaccgcctccacggctcctcagaccgtccgc
ctggcctcccctgctcagaccagaatggttcagtccacctccaccgtacagaagacaatc
tctgtggcccccgggggcgccatggtgacggtgaagatgcccccccctcagaagggcccc
acagtgattacaggaaacaagccttcccccccgaccctcagcacccccgccccccctgcc
aggggccccctcctgtccacggagatgcaggagaacgtgaagaagtgtaagaacttcctg
gcgacgctcatcaagctggcgtctcacaactcgccgtcccccgacacctccaagaacgtg
aaggcgctggtccaggacctgctggatgcaaagatcgagccggaggagttcaccacgcgg
ctgcaggcggagctgaagtcctctcctcagccgtacctcatccccttcctcaagaaaagc
ctcccctcgctgcgtcagtctctgctcaccaaccagcagaacctgatggcctccacctcc
gccccccccatcatctccacctccatcagacccagactacccatcagccccggcgccacc
acggtacgcctcaacaccccgctggtgggggtccgggcgggggtcccggctcgatcgccc
gtcgtcttcaatcagacgctccgacctcaaggtacgctcatcagaggaccgaccaccatc
ataggtaggagtccgctgaatgtggctccggccaatcagaggaagctgagcgaccctggg
ggcgggactttcagagacgacgatgacatcaacgacgtggcgtccatggcgggcgtgaac
ctgaacgaggagaacgcccggatcctcgccaccagctcggagctcgtgggaaccaagatc
agatcctgcaaagacgaagccttcctgcccccaggaccgctgctcaaacgcatcctcgac
tcagcgaagcagcagggggtcctggaggttcctccggaggtggtggctctgatctctcac
gccactcaggcccgactgagagctctgctggagaaagtgagcagcatcgctcagcaccgc
agtgagggggggaaggaggacgagcaggagtgtatgtcagacgttcgctctcagctccgg
ttcttcgagcatctggagaggctggagaaacagaggaaggacgatcaagagagagagatc
ctgctgaaggctgccaagagtcgagctcgacaggaggatccggagcaggcgcgtctgaag
ctgaaagctaaggagatgcagcagaatgagttagctcagatgaggcagcgagacgctaac
ctgacagcgctcgctgccatcggaccgaggaagaggaaaaagatggactcaccgggagga
agctccgcccccgaggtggtgtctggcccaggctcctcccccggatcctcgtcgtcacgg
caacagctgcgacagcgaatcaccagagtgaatctcagggacttcattttctgcctggag
accgaccgcatcaccgccagatccctcacgctctacaaggctctgctcaaataa
DBGET
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