Trematomus bernacchii (emerald rockcod): 117470664
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Entry
117470664 CDS
T09643
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117470664 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117470664 (nup98)
03036 Chromosome and associated proteins [BR:
tben03036
]
117470664 (nup98)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117470664 (nup98)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117470664 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
117470664
NCBI-ProteinID:
XP_033971372
LinkDB
All DBs
Position
Unknown
AA seq
1816 aa
AA seq
DB search
MFNKSFGTPFGGGTGGFGAASTFGQQNAGFGTTGGFGTSAFGAAANTGGLFGPAQAKPAG
GLFGASTFSQPPASSAATGFGFGAAAAGGTATSLFGNTGTGTTGGLFSQPSNAFGASKPT
SFGKVSLPSCPPGFGTSAASGGLFGSTAAAASNPFGGSAVSSLFGGAGFTAAQQQPGTTV
KFNPPTGTDTMVKAGVTTSINTKHQCITAMKEYENKSLEELRFEDYSAGRKGPSNPMAAP
TGGLFGTPAAAAPSAATGLFGAAAANTNFSFGQNKSTFGATPAAGGFGATAGGLFGQQQA
AQQQQQQQQQQQQQQQQQAQQAAAASSLFKPFGATTTTQSSGFSFGNTNTMGQANTSSIG
LFGNTAAPQPTGLFGAAQPSAAATGFGAATGLFGQTNTGFGNVGTQQSLFGNKTAGFGTT
TTSAPSFGTGTGLFGNKPALTLGAGTNTSTFGFGANPAAGGLFGNKPATGGLGAALGTSF
GAAVPGQTSLFGNTQGKLGTTLGTMGAFGASAFNTGATSMGFGAPQQAVALTDPSGAAAQ
HALLQQQLSVLAYSPYGDSPLFRNPLSDPKKKEERLKPTNPTAQKALTTPTHYKLTPRPA
TRVRPKALGSSGASKSQLFDGLDDDEPSLTNGAFVPRKSIKKLVLKNLNSSQYSSPLSKE
IDDLASPPEYPHNGHSSHVEDEEEMAGVSSRTEEDPEVSQFYVNPISKPVAFSPPTVLQD
TISELNMHKAARNGLEVSSDDISASLCEESLQEEQEEEQLEQQPPHPAGIVLNRVGYYTI
PSMEDLAEMVDGNGDCLVENFTVGRKGYGSIFFPGEVNASGLNLDDIVHFRRKEVIVYPD
DKNKPPEGEGLNRKAEVTLDGVWPNDKTSCAQIRSPERLTEMNYEGRLEKASRRQGARFL
EYRTETGSWVFEVAHFSKYGLQDSDEEEEVPLKSDPKKLKTMSLPASRLQKLLPPAQQQS
PAVSDLPELDSVMADITTESMLGGDEDEELPKGKKTTEETIDDSIPNEHEVMSSSSCMMS
SLGINPHTLQIMKASLFAEDEEDMFQEPPAVMKSSEVSSPRIVLPQSRTSVGGLLQARFS
SGLFSLPDSPRPPPPASSEPPRWAGSSSFLLPQRPPEPSVRTVGVRRLGGPVPLKDSITQ
GKGSLLMDAALFRGRSFRVGWGPGWTLVHSGERVSSEEKNTNNFTKNEFSFLPSARSRPL
MESCYKVVVEQLEVKDQDQEDNDDDVQRPLEISLMNSSVETPSGSPCPLVTPRPGVEALH
QYSDWIRELSSRGAAEPLLGPWSEVWSLLEALWGRLGSEQEDISEYEQQIQRRNTFSSWL
SRGASSRVEEEVALAGKHRHIDAIFSLLTGNQISEACCLAQSQGDHCLSLLLSQAGGSQD
CRELLFLQLNDWRSLQTDSYVAEERLKIYTLLSGRGVWQSSDSSVNVFSELDWKRCIGVS
LWFLLPPTSSVADALSGYETAFQGSCEGGKYAVAPLPPYLEEEEPHLEEEEEEETKRPLH
DLCFHLLKLYSDRHYSLQQLLDPLSVTWQRLDYRLSWHLWGVLQALHYTHLSSSRQGLLH
SSYAAQLESKGLWHMAIFILMHIHDHTQRERAVKEMLALYCPLQETEDSQQRERFLTERL
LLPETWIHQAKATRARRDAAHQQEALHLYRAGAWSQCHRLLIQHLASDCIINDNHNFLLE
FLEGLAVPERSATIQDWDTAGGVYLDYIRVIQTLERIQQLESAGYELERLHSAVTSLCSR
IELLPCSCARDRLAQSEMAKRVANILRVVLSLQHPLSIPLARLAPHIARLPMPEDYTLEE
LRGLTQAYLQQLVLSQ
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcttttggtactcccttcgggggagggacggggggcttcggcgccgca
tccaccttcggacagcaaaacgcgggttttgggacgacgggaggctttgggacgtcagcg
ttcggggcggccgccaacactggaggactgttcggtcccgctcaggctaaacctgcaggt
ggtctttttggagctagcaccttcagccagcctccagcttcctccgctgccacaggtttt
gggttcggagcagcggccgccggcggcaccgccacgagcctgttcggaaacaccggcacg
ggaaccaccggaggactcttctctcagccgagcaatgccttcggggccagcaaacccacc
tcgttcggaaaagtctccctcccatcgtgtcctccaggctttgggaccagcgccgccagt
ggagggctgttcgggtccacagccgccgccgcctccaatcccttcggagggagcgccgtg
tcctctctgttcgggggggcgggcttcaccgccgctcagcagcagccgggaaccaccgtc
aagttcaaccctccgacaggaactgacacgatggtgaaggccggcgtgacgacgagcatc
aacaccaagcaccagtgcatcacggccatgaaggagtacgagaacaaatccctggaggag
ctgcgtttcgaggactactcggcgggcaggaagggacccagcaacccgatggcagcgccg
acgggcggtttgttcgggacgccggccgccgccgcgcccagcgccgccaccgggctgttc
ggagccgccgccgctaacacaaacttctccttcggacagaacaagagcaccttcggagcc
acaccggctgccggggggttcggagcgacggccggcggtctgttcgggcagcagcaggcg
gctcagcagcagcagcaacaacagcagcaacaacaacaacaacagcagcagcaggcgcag
caggcggcagcggccagtagcctcttcaaacccttcggagcgaccaccaccacccagagc
tccggattctccttcggaaacaccaacaccatgggccaggccaacaccagcagcatcggt
ctctttgggaacacggcggctcctcagcccaccggcttgttcggcgccgctcagcccagc
gccgcggccaccggcttcggggcggccaccggactcttcggacaaaccaacaccgggttc
gggaacgtcggcacacagcagagtttatttggtaataagacggcagggttcggcaccacc
accaccagcgctccgtccttcggcaccggcaccgggctgttcggaaacaaaccagctctc
acgctgggggcgggaaccaacacctccactttcgggttcggtgccaacccggctgctggg
ggtctgtttgggaacaaaccggccaccggaggactgggagctgctctgggaaccagcttc
ggagcagcagtgccaggacagacgtctctgttcgggaacactcagggtaaactgggcacc
actctgggaacgatgggagcgttcggagcgtcggcgttcaacaccggagcgacttcgatg
ggcttcggagcgccacagcaggcagttgcgctgacggaccccagcggcgcggcggcccag
catgcattgctgcagcagcagctcagtgttctggcgtattctccgtacggagactctcct
ctgttcagaaacccgctgtcagaccccaagaagaaggaggagcgtctgaaaccgaccaat
cccacggcccagaaggctctgaccacgcccactcactacaagctcaccccccgtccggcg
acacgcgtccggcccaaagctttgggttcttcgggggcttcaaagtctcagctgttcgac
gggctggacgacgacgagccgtcgctcacaaacggggcgttcgttcccaggaagagcatc
aagaagctggtcctgaagaacctgaacagcagtcagtacagcagccctctgagcaaggag
atcgatgacctggcctcgcccccagagtaccctcacaacgggcacagcagtcatgtggag
gacgaggaggagatggcgggtgtcagcagtcgaacagaagaggatccagaagtgtctcag
ttctacgtgaacccgatctctaagccggtcgctttcagcccccccacggtgctgcaggac
accatcagcgagctcaacatgcacaaagccgcgcgcaacggcctggaggtgagcagcgat
gatatctcagcgtctctgtgtgaggagtctctgcaggaggaacaagaggaagagcagctg
gagcagcagcctcctcaccctgcaggcatcgttctgaaccgcgttggttactacaccatt
ccctccatggaggacctggctgagatggtggatggaaacggagactgtttggtggagaac
ttcaccgtgggaaggaaaggctacggctccatcttcttccccggagaggtgaacgcatcg
gggctgaacctggacgacatcgtgcacttcagacgcaaagaggtcatcgtttaccccgac
gacaagaacaagcccccagagggggaggggcttaacaggaaggcggaggtgactctggac
ggcgtctggcccaacgataagacgtcgtgcgctcagatccgcagcccggagcgtctgacg
gagatgaactacgagggccggctggagaaggcctcgcgcaggcagggggcccgcttcctg
gagtataggacggagaccgggtcctgggtgttcgaggtcgcccacttctcaaagtacggc
ctgcaggactctgacgaagaggaggaagtgccgctcaaatctgaccccaagaagctgaag
acgatgtcacttcctgcctcgcgtctgcagaagctgctcccccccgcccagcagcagtcc
cccgcggtgtcagacctcccggagctggacagcgtcatggccgacatcacgacagagagc
atgctgggaggtgatgaagacgaggaactgccgaaggggaagaagacgacggaggagacg
atcgacgattcgattcccaacgagcacgaagtgatgtcatcatccagctgcatgatgtcc
tcgctgggcatcaacccacacaccctgcagatcatgaaggcctctcttttcgctgaagat
gaggaggacatgttccaggagccgccggcggtgatgaagagctccgaggtctcttctcct
cgcatcgtgctgcctcagagcagaacgtcagtggggggtctccttcaggctcgtttctcc
tccggtctgttctctctccctgactcgccccgcccccctccccctgcctcctcagagccc
ccccgctgggccggctcctctagcttcctgttgccccagcgcccccccgagccctccgtc
aggaccgtgggggtccggaggctcgggggccccgtgcccctcaaagactccatcactcag
gggaaggggtctctgctgatggacgctgcgctcttcagagggcgctccttcagagtgggc
tgggggcccggctggactctggttcactcaggagagagggtcagctccgaggagaagaac
accaacaacttcacaaagaatgagttcagcttcctgccatcagccaggagcagaccgttg
atggagagctgctataaggtggttgttgagcagctggaggtgaaggatcaggatcaggag
gataatgatgatgatgtgcagcgccccctagagatcagtctgatgaacagcagcgtggag
accccctctggctcgccctgccccctggtgaccccccgccccggggtggaggcgctacac
cagtactccgactggatcagagagctgagcagcaggggggccgctgagccgctgctgggc
ccctggtcggaggtctggagcctcctcgaggccctgtggggtcgactgggctccgaacag
gaagacatcagcgagtacgagcagcagatccagaggaggaacaccttctcctcctggctg
tcccggggagcctcctctcgcgtggaggaggaggtggcgctcgctgggaaacaccgacac
atcgacgccatcttcagcctcctcacagggaaccagatcagtgaagcctgctgtctcgct
cagagtcaaggagaccactgtctctcgctcctcctctcccaggcgggggggtctcaggac
tgcagagagctgctgtttctgcagctgaacgactggaggagccttcagacagacagctac
gttgctgaggagagactgaagatatacaccctgctgtcagggagaggggtgtggcagtcg
tctgattcgtcagtgaacgtgttctctgagttggattggaagcggtgtatcggggtctct
ctctggttcttgctccctcccacctcctccgtggccgacgctctgtccggatacgagact
gccttccagggctcctgtgagggggggaagtacgccgtggcccccctgcccccctacctg
gaggaagaggagcctcacctggaggaggaggaagaggaggaaaccaaacgccctctgcac
gacctctgcttccacctgctgaagctctacagcgacagacactacagcctgcagcagctg
ctcgaccctctgagcgtcacctggcagcgtctggactacagactcagctggcacctgtgg
ggcgtccttcaggcgctgcactacactcacctgagctcctctcgacagggcctcctgcac
agcagctacgcagctcagctggagagcaaaggcctctggcacatggccatcttcatcctg
atgcacatccacgaccacacgcagcgtgagcgggcggtgaaggagatgctggcgctctac
tgccccctgcaggagacggaggactctcagcagagggagcgtttcctcactgagaggctt
ctgctcccagagacctggatccatcaggccaaagccaccagagcccgcagggatgcagcc
caccagcaggaggcgctgcacctgtacagagccggagcctggagtcagtgccaccggttg
ctcatccagcacctggcctcagactgcatcatcaacgataaccacaacttcctgctggag
ttcctggagggtctggcagtccctgaacgcagcgccaccatccaggactgggacaccgcg
gggggggtgtacctcgactacatccgggtcatccagacgctggagcggatacagcagctg
gagagcgcaggatatgagttggagcgtctccactctgccgtgacgtctctctgcagccgc
atcgagctactgccctgtagctgtgccagagaccgcctcgcccaatcagagatggctaag
cgcgtggcgaacatcctgcgtgtggttctgagtctgcagcacccgctcagcatcccattg
gctcgtctggcgccacacatcgcccgcctgccgatgcccgaggactacactctggaggag
ctgagaggcctcactcaggcttacctgcagcagctggtgctcagccaatga
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integrated database retrieval system
