Trematomus bernacchii (emerald rockcod): 117470748
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Entry
117470748 CDS
T09643
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117470748 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117470748 (cnot10)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117470748 (cnot10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_14
TPR_19
ANAPC3
TPR_8
TPR_7
ARM_TT21
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
117470748
NCBI-ProteinID:
XP_033971495
LinkDB
All DBs
Position
Unknown
AA seq
730 aa
AA seq
DB search
MAENTEQNEAKHDSSSSPGVTDQEKEMAASAYEAYLSGKYDESLKHLETLQELNKEDYKI
AMNKAVVEFYKSSQTTTGTLKQTLMAMKNQVHTSAEDIDGLDDVENSWLYYNQAIIHYHM
RQYSDAIAIGERLYQFLEPFEKFAQAVCFLLVDLYLLTFQPEKALHLLAVLDKLSTTGSS
KNGKGESSNKDGANQKAEFTAMMEAAKSKMHQYKVRAYIQMKSSKACKREIKSVMNTAGN
SAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGPIKTGECVRCMFWNNLGCIHFAMGK
HNLGIFYFKKALQENDHTCAQLGDGSNAQAKKFTGIPMCALLANKRYELLYNCGIQLLHI
GRPLAAFECLMEAVQVYHSNPRLWLRLAECCISANKGSEQESKGLPCKKGIVQSIVGQGY
HRKIILASQSTQNTIYSEGQSAAIPVASMEFAAIGLRNALLLLPEHQQDAKTENGSKICS
QAGSTESGSEISDACSGKGPEADKFLSAAPSSPLRKQEVENLRCSILACSAYVALALGDN
LMALNHAEKLLHQTKVSGSLKFLGHLYAAEALISLDRISDAIGHLNPENVSDVSMGVLSS
EQDQGSDKGEEPVESSGKQTPLCYPSSVTSARAMMLFNLGSAYCLRSEYEKARKCLHQAA
SMVNTKEIPPEAILLAVYLELQNGNTQLALQIIKRNQLLPSPVQRVSPDSRKKPVQPIQL
PSSFTQVQRK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatacagaacaaaacgaagcaaagcatgacagctcatcgtcccctggcgtg
acagaccaggagaaagaaatggcagccagtgcatatgaagcatatttgagcgggaagtac
gacgagtcactcaaacacctggaaaccctgcaggagctcaacaaggaggactataagatc
gctatgaacaaagccgtcgtagagttttacaaaagcagtcagactacaacagggactctg
aagcagacactaatggcaatgaagaaccaggttcacacatcggcagaggacattgatggg
ttggatgatgtagaaaatagttggctatactataatcaagccatcatccactatcacatg
cgacagtactctgacgccatcgcaataggagagaggctctaccagttcctggaaccgttt
gagaagtttgctcaggcggtgtgcttcctgctggtggacctgtacctgctcaccttccag
ccagaaaaggccctccacctgctggctgtgctggacaaactgtccacaacaggaagcagc
aagaacggcaaaggagagagttcaaacaaagatggagccaaccagaaggcagagttcaca
gccatgatggaggccgccaagtcaaagatgcaccagtacaaagtgagagcctacattcag
atgaaatcctccaaggcctgtaagagagagatcaagtcagtgatgaacacagcagggaac
tctgcaccctcacttttcctcaagagtaactttgaatacctgagaggaaactaccggaaa
gcagtgaagctgttgaacagttccaacatcgcagagcatcctggacccatcaagacgggg
gaatgtgttcgatgtatgttctggaacaatctggggtgcatacacttcgcaatggggaaa
cacaacctaggcattttctacttcaagaaggcgctgcaagagaacgaccacacgtgcgca
cagctaggagacggcagcaacgcgcaagctaagaagttcacaggtatcccgatgtgcgct
ctgctagcgaacaagcgctacgagctgctgtataactgcgggatccagctgctgcacatc
ggaaggcctctggccgccttcgagtgtctgatggaggccgtgcaggtgtaccactccaac
cccagactgtggctgcgcctggcagagtgctgcatctccgctaacaagggatcggagcaa
gaaagcaaaggtttaccttgtaaaaaaggtatagttcagtctattgtcgggcaaggctac
catcgcaagatcatcctggcatcgcagtctacccagaacactatatacagtgagggccag
tcagcagctatcccagtagccagtatggagtttgcagccatcggcctgaggaacgcactg
ctgctgctgcctgaacaccagcaggacgccaagacagagaacggctccaagatctgcagc
caggcagggagcaccgagagcggcagcgagatcagcgacgcctgcagtgggaagggtccg
gaggccgataagttcctgtccgctgcaccatcgtcccctctcaggaaacaggaagtggag
aacctcaggtgctccatcctggcctgcagtgcctatgtggcgttggcactgggagacaac
ctgatggcactgaaccacgctgagaaactgctccatcaaactaaggtgtccggatcgctc
aagttcctgggtcacctctatgctgctgaagccctcatctcattggacaggatctcagac
gccatcggacacctcaacccagagaacgtgagcgacgtgtcgatgggggtgctgagcagc
gagcaggaccaaggttcagacaaaggagaagagcctgtggagtcctcagggaaacagacc
cccctgtgttaccccagcagtgtgacgtcagcccgggccatgatgctcttcaacctgggc
agcgcctactgtttgaggagcgagtacgagaaggcccgcaagtgcctgcatcaggctgca
tctatggtgaacactaaggaaattccacctgaagccatcctgctggcagtgtacttagag
ctgcagaacggaaacacccagctggccctgcagatcatcaaacggaaccagctgctgccc
tcgccggtccagagggtctccccagactcccgcaagaaacccgtccagcccatccagctg
ccctcatcctttacacaagttcagcgcaaatga
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