Trematomus bernacchii (emerald rockcod): 117471010
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Entry
117471010 CDS
T09643
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117471010 (rbm22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117471010 (rbm22)
Spliceosome [BR:
tben03041
]
Complex B
Other components
Prp19-related factors
117471010 (rbm22)
Complex C
117471010 (rbm22)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
RRM_occluded
Nup35_RRM_2
zf-CCCH_2
zf-CCCH
RRM_3
zf-CCCH_4
RRM_YTH1
zf-CCCH_12
zf-CCCH_PARP12
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
117471010
NCBI-ProteinID:
XP_033971682
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEFGLPIQVRDTGLSVKDEVPKSDVNKEYYTQN
MEREIANSDGTRPVGQLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPDDKSISTLYIGGLG
DTVTDGDLKSHFYQFGEIRTITIVQRQQCAFIQFATRQSAEMAAEKSFNKLIINGRRLTV
KWGRSQAARGKEGVKEGVSEMGTRLDPVPGLPGALPPPPALDEEAPANYFNLDPSSSPAV
MNIALPPPPGINPPPPGFGPPMFHPMGHMAPPMPPPMSMRPPGQIHYPSQDPQRMGAHAA
HGARQGE
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtctctaggatccaacacctacaatagacagaactgggaagacgcggatttt
ccaattctgtgtcaaacatgtttaggagaaaacccatatatccgcatgaccaaggagaag
tatgggaaagagtgcaagatttgtgctcgtccattcactgtgttccgatggtgcccgggg
acacggatgcgttttaagaagactgaggtctgtcagacctgcagtaaaatgaagaatgtt
tgtcaaacatgtctgctggacctcgagtttggtttgcctattcaggtcagagacaccggg
ctgtcagttaaagacgaggttcctaagtcggatgttaacaaagagtactacacacagaac
atggagagagagatagccaattctgatggcacacggccagtgggccagctgggtaaagcg
cccagctctagtgacatgttgctgaaactggccaggaccacgccatactacaagaggaac
agaccacacatctgctccttctgggtgaaaggagagtgtaagagaggggaggaatgtccc
tacagacacgagaagcccaccgatcctgatgatcctctggccgaccagaacatcaaggac
cgttactacggcattaatgaccctgtggctgacaagctgctgaaacgggcctcaactatg
ccgcgtcttgacccaccagacgacaagtccatctccaccctctacatcggaggattggga
gacactgtcactgatggagatctcaagagtcacttctaccagtttggagagatccgcacc
atcaccatagtccagaggcagcagtgtgccttcatccagtttgccactcggcagtcagct
gaaatggctgctgagaagtccttcaacaaactcatcattaatggacggaggctcactgtc
aagtggggaaggtctcaggcagcaagagggaaggagggtgtcaaagaaggtgtcagtgag
atgggcaccagacttgatcctgtacctggactgcctggagctcttcctccacctccagct
ttagacgaagaagctcctgctaactacttcaacctggaccctagcagctctcctgcggtc
atgaacatcgctctgcccccccctccaggcatcaacccgcctcctccaggttttggccct
ccaatgtttcaccccatgggtcacatggctccacctatgccccctccaatgagcatgaga
cctcctggtcaaatccactacccctcccaggatcctcagcgcatgggagcccacgctgca
catggcgcacgtcaaggcgaatag
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