Trematomus bernacchii (emerald rockcod): 117471040
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Entry
117471040 CDS
T09643
Symbol
hif1al
Name
(RefSeq) LOW QUALITY PROTEIN: hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04137
Mitophagy - animal
tben04140
Autophagy - animal
tben04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117471040 (hif1al)
04137 Mitophagy - animal
117471040 (hif1al)
04148 Efferocytosis
117471040 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117471040 (hif1al)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117471040 (hif1al)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
117471040
NCBI-ProteinID:
XP_033971712
LinkDB
All DBs
Position
Unknown
AA seq
537 aa
AA seq
DB search
MDTAGRREESEEEEEEEEDQMDAFYPQALGGFIMVMTEEGELIYLTESVSRHIGLTQLEL
LGQSVYDFVHPCDQEELRDLLTTRPGLRKKPLAEQPSERNFFLRVKSTLTSRGRTVNIKS
AAWKVVHCTGHLRQLGGGSTSPPAGRVMTLLCEPIPHPSSVEFPLDTCTFLTRHSMDLRF
THCEGRVTELVGYKPEDLIGCSAYKFYHALDSHHVNKSLQTLLSKGQVSTRHYRFLANSG
GFVWAETQATVLYSSRTSLPEAVVCLKFILSGVEQPDVVFSVEQXRCGRLPEAEPQPAED
SGISDLSQSDSGRRKEELLKEASEAEDPITPLTGDFLELSFCSPCGQCSVPEHPQDLCTP
QLRQLLSPIFSPLTPPSSSSPCSSPEDQLEVMDLHMLALYISMDDDFQLSVLSSVPEDDK
PSSSKASAGRPADTASRKRTHHPDEELLMIQDKRQKADPSSIEEELLLSHRLLDCLEEIN
QSDCFVQPGPXLTDRDPVLGAMQGLCDTADFTRSLVVLGVQDCDFLSVKCPQTLDSC
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggatacagcaggtaggagagaggagtctgaagaggaggaggaagaggaggaagatcag
atggatgctttctatcctcaggctctcgggggcttcatcatggtgatgacggaggaggga
gagctgatctacctgacggagagcgtcagcagacacatcggcctcacgcagctggagctg
ctgggtcagagtgtttatgactttgttcatccctgtgatcaggaggagctcagagacctg
ctcactacacgtccaggtttacgtaagaaaccgctggcagaacagccgagtgagaggaac
ttcttcctgagagtgaagagcacgctgaccagcagggggcgcaccgtcaacatcaagtct
gctgcctggaaggttgtccactgtacgggtcacctccgtcagctgggcgggggctccacg
tcgccccctgcaggcagagtgatgaccctgctgtgtgagccaatccctcacccctccagc
gtggagttccctctggacacctgcaccttcctcacccgccacagcatggacctgcgcttc
acccactgcgagggcagggtgacagagttggtgggatacaaacctgaagatctgattggc
tgctcagcctacaagttttatcatgcacttgactctcatcacgtcaacaagagcctgcag
acactgctgtctaaaggccaggtgagcaccagacattaccgcttcctggcgaacagcggg
ggcttcgtgtgggcggagacccaggccaccgtcctctacagcagcaggacgtcgctgccc
gaggccgtggtctgcctcaagttcatcctcagcggtgtggagcagccggacgtggttttc
tccgtggagcagncccgctgcggccggctgcctgaagctgagccccaaccagcagaggat
tctgggatttctgacctcagccagtctgactccggcaggaggaaggaggagcttctgaag
gaggcttcagaggcggaggaccccatcaccccgctgacaggagatttcttggagctgtcg
ttctgcagtccctgcggtcagtgctctgtgccggagcaccctcaggacctgtgcaccccc
cagctgcgtcagctgctctcacccatcttcagccccctcactccaccttcctcatcctca
ccctgctcctcccctgaggatcagctggaggtgatggatctgcatatgttggctctgtat
atctccatggacgatgacttccagctgagcgtcctcagcagtgtgccggaggacgacaag
ccctcctcctctaaagcgtccgctgggaggccggcagacacagccagcaggaaacggact
catcacccagatgaggagttgctgatgattcaggacaagagacagaaagcggatccttcc
tccatagaagaggaactgctgctcagccacagactgctggactgtctggaggaaatcaac
caatcagattgcttcgtgcagccgggccctnngctcacagacagagaccctgttctgggg
gccatgcagggactttgtgatactgcagatttcactcggtcactcgttgtactcggtgtt
caagactgtgacttcctgtctgtaaagtgtcctcagaccctggacagctgttga
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