Trematomus bernacchii (emerald rockcod): 117471100
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Entry
117471100 CDS
T09643
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117471100 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117471100 (exosc5)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117471100 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
117471100
NCBI-ProteinID:
XP_033971790
LinkDB
All DBs
Position
Unknown
AA seq
220 aa
AA seq
DB search
MMEVCGSTNVSLREFGCEQTLLSRPDGSASFVQGDTSVMAAVYGPAEVKVSKEIYDRATL
EVLIQPKVGLPSVRERSQEQCVRETCEASLLLTLHPRSSLTLVLQLIHDDGSRLACFLNA
ACMALMDAGLPMSCLFCGVTCAINTDSEIITDPTAAQEKESRALMTFAIDSKEQRVMMSY
TKGSFSVHELQQCIAVSQKASENIFQFYRDSVSRRYSKNL
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagtgtgcggctctacgaacgtttctctgagggagttcggctgtgaacaaacg
ttactgtctcgaccggacgggtcagcctccttcgtacaaggtgacacgagtgtgatggcc
gcagtgtacggaccagctgaggtcaaagtcagtaaggaaatctacgaccgagcaaccctg
gaggtgttgatccagcccaaagtgggactgcccagtgtaagggagcgatcccaggagcag
tgtgtgagagagacctgtgaggcgtctctgctcctgaccctccacccccgctcctccctc
accctggtcctccagctgatccatgacgacggctcccgcctggcctgcttcctgaacgca
gcctgcatggccctgatggacgcaggcctgcccatgagctgcctgttctgtggggtgact
tgcgccatcaacacagactctgagatcatcacggaccccaccgcggctcaggagaaggaa
agtcgagctttgatgacttttgctattgacagcaaggaacaaagagtgatgatgtcatac
accaagggatcattttcagttcatgagctgcagcagtgtatagcagtcagccagaaagcc
tcagagaacatcttccagttctacagagactccgtcagcaggcgctactccaaaaacctc
tga
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