Trematomus bernacchii (emerald rockcod): 117471232
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Entry
117471232 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: NACHT, LRR and PYD domains-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tben04054
]
117471232
Pattern recognition receptors [BR:
tben04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117471232
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NLRC4_HD2
NACHT
FISNA
NOD2_WH
PRY
SPRY
LRR_6
Phage_portal
Motif
Other DBs
NCBI-GeneID:
117471232
NCBI-ProteinID:
XP_033971981
LinkDB
All DBs
Position
Unknown
AA seq
1207 aa
AA seq
DB search
MSRVSSTQEAAECLKVDLKIKHWKPRPGPSCVSKSDSSMDPPIELKDGQHSDPEIQHEET
GPETGSGPGADSGSGSGPSCVSMKSDRSMDKPIGFRDGKHSDGPRIQHEETGPDSGPGPS
CVSMKRVRSMGKPIGFTYRMHSDSPRIKEQRPVHRTSSCVSMKSDHFREFYSKIQRKHFN
NHPLHRAYRQNSEVPINQSVQLDSVFMLLQENIVRFVEDELKKIQRVLSLDYPEGLESQR
EDEEVLDGEDEEQRRSSREAFLNITLHFLRSMKQEELADRLQSKTNARVCKRKLKSTLKE
RFQCVFEGIAKAGNPTLLNQICTELYITEGGGSAGVNDEHEVRQIETASRKPDRPETTIT
QEDLFKASPGRDAPIRAVMTKGVAGIGKTVLTQKFTLDWAEGKANQDIQFIFPFTFRELN
VVRENKYSLVELVHHFFTETRDAGICRFDQFPVVFIFDGLDECRLPLDFHNNDILTDVSE
STSVDVLLTNLIRGKLLPSARLWITTRPAAANQIPPECVDMVTEVRGFTDPQKEEYFRKR
FRDQEQAGTIISHIKTSRSLHIMCHIPVFCWISASVLEEVLKTREGGELPKTLTEMYIHF
LVVQSKVKNIKYDGGAETDPHWSPESRKMMESLGKLAFEQLQKGNLIFYESDLTECGIDI
RAASVYSGVFTQVFREERGLYQKDQVFCFVHLSVQEFLAALHVHLTIINSGVNMLSEEPT
TSQKSKVFRPKPELTHLYRSAVDKALQSANGHLDLFLRFFLGLSLQTNQILLRGLLTPQT
GSGSETNQETVQYIKRKIEEMPSAERSINLFHCLNELNDHSLVEEIQQSLRSGSLSTEEL
SAAQWSALVFILLSSEEDLDVFDLQKYSASEEALLRLLPVVKASNKALLSSCKLSERSCA
ALSSVLSSQSSSLRELDLSTNELEDSGVKLLSAGLGSPHCELETLSLSGCLVTEEGCVSL
ASALSSNPSHLRALDLSYNHPGDSGEKLLSAGLEDPLWRLETLRLDHGGEQWLTPGLRKY
SCELTLDTNTAHRKLKLSDKKWKVTRVLEKKPYPDHPARFDCWEQLMCREALTGRCYWEV
EWRGQVYISVTYRGIRRRGVSEDCVFGYNDRSWSLICSAGRYSVCHNNSKTVLPLSSYSS
SSSSCLFLSSSDRVAVYVDHPAGSLSFYRVSSDTLSHLHTFRTTFTEPLYVGFMFCSEGS
SVSLCSL
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgagcagagtttcctccacacaggaagctgcagagtgtctgaaagtggacctgaagatc
aaacattggaaacctagacctggacccagctgtgtgtctaagagtgactcctctatggat
ccacccattgagttgaaagatggacaacactctgatccagagatccaacatgaggaaact
ggacctgaaactggatctgggcctggagctgattctggatctggatccggacccagctgt
gtgtccatgaagagtgaccggtctatggacaaacctattgggttcagagatggaaagcac
tctgatggtccaaggatacaacatgaggaaactggacctgattctggacctggacccagc
tgtgtgtccatgaagagggtccggtctatgggcaaacctattgggtttacatacagaatg
cactctgatagtccaaggatcaaagaacagaggccagtccaccgtacatccagctgtgta
tccatgaagagtgaccacttcagagagttttatagcaagattcaacgaaagcactttaac
aatcatcctctccacagagcttatcgacagaattcagaggttcccattaatcagtctgtc
cagctggactccgtattcatgctgctccaggaaaacatcgtcagatttgtggaggacgag
ctgaagaagatccagagagtcctgagtttagattacccagaaggcttagagagtcagagg
gaggatgaggaggtgttggacggtgaggatgaagaacagaggaggagcagcagagaggca
tttctgaacatcacactgcacttcctgaggagcatgaagcaggaggagctggctgaccgt
ctgcagagcaaaactaatgctcgagtgtgcaaacgtaaacttaagtccaccctgaaggag
aggttccagtgtgtgtttgagggcattgctaaagcaggaaacccaacccttctgaaccag
atctgcacagagctctacatcacagaggggggggggtctgcaggggtcaatgatgaacat
gaggtcagacagattgaaacagcatccaggaaaccagacagaccagaaacaaccatcaca
caagaagacctctttaaagcctcacctggaagagatgcaccaatcagagcagtgatgaca
aagggcgtggctggcattgggaaaacagtcttaacacagaagttcactctggactgggct
gaaggcaaagccaaccaggacatccagttcatatttccattcaccttcagagagctgaat
gtggtgagagagaacaagtacagcttggtggaacttgttcatcacttcttcactgaaacc
agagacgcaggaatctgcaggtttgatcagttcccggtcgtgttcatctttgacggtctg
gatgagtgtcgacttcctctggacttccacaacaatgacatcctgactgatgtctcagag
tccacctcagtggatgtgctgctgacaaacctcatcagggggaagctgcttccctctgct
cgcctctggataaccacacgacctgcagcagccaatcagatccctcctgagtgtgtggac
atggtgacagaggtccgagggttcactgacccacagaaggaggagtacttcaggaagaga
ttcagagatcaggagcaggccggcaccatcatctcccacatcaagacctcccgaagcctc
cacatcatgtgccacatcccagtcttctgctggatctctgcttcagttctggaggaggtg
ttgaaaaccagagaggggggagagttgcccaagaccctgactgagatgtacatccacttc
ttggtggttcagtccaaagtgaagaacatcaagtatgatggaggagctgagacagatcca
cactggagtccagagagcaggaagatgatggagtctctggggaaactggcttttgagcag
ctgcagaaaggcaacctgatcttctatgagtccgacctgacagagtgtggcatcgatatc
agagcagcctcagtgtattcaggagtgttcacacaggtctttagagaggagagaggactg
taccagaaggaccaggtgttctgcttcgtccatctgagcgttcaggagtttctggctgct
cttcatgtccatctgaccatcatcaactctggagtcaacatgctgtcagaagaaccaaca
acctcccagaagtctaaagtcttcagacccaaacctgaactgacacatctctaccggagt
gctgtggacaaggccttacagagtgcaaacggacacctggacttattcctccgcttcttc
ctgggtctttcactgcagaccaatcagattctcctacgaggtttgctgacaccacagaca
ggaagtggttcagagaccaatcaggaaactgtccagtacattaagaggaagatcgaagag
atgccctctgcagagagaagcatcaacctgttccactgtctgaatgaactgaatgatcat
tctctagtggaggagatccaacagtccctgagatcaggcagtctctccacagaggaactg
tctgctgctcagtggtcagctctggtcttcatcttactgtcatcagaagaagatctggat
gtgtttgacctgcagaaatactctgcttcagaggaggctcttctgaggctgctgccagtg
gtcaaagcctccaacaaagcgttgctgagtagctgtaagctgtcagagagaagctgtgca
gctctgtcctcagtcctcagctcccagtcctctagtctgagagagctggacctgagtacc
aacgaactggaggattcaggagtgaagctgctgtctgctggactggggagtccacactgt
gaactggagactctcagtctgtcaggctgtctggtcacagaggaaggctgtgtttctctg
gcttcagctctgagctcgaacccctcccatctgagagcgctggacctgagctacaatcat
ccaggagactcaggagagaagctgctgtctgcaggactggaggatccactctggagactg
gagacactcaggctggaccatggtggagagcagtggcttacaccaggtctgaggaagtat
tcctgtgaactcacactcgacacaaacacagctcacagaaaactaaaactgtctgacaaa
aaatggaaagtgacacgtgtgttggagaagaagccatatcctgatcatccagcgaggttt
gactgctgggaacagctgatgtgcagagaagctctgactggtcgctgttactgggaggtc
gagtggagaggacaggtttatatatcagtgacttacagaggaatcaggaggagaggagtc
agtgaggactgtgtgtttggatataatgatcggtcctggagtctgatctgttctgctggt
cgttactctgtctgtcacaataacagtaaaactgttctccctctctcctcctactcctcc
tcttcctcctcctgcctcttcctctcctcctctgatagagtagcagtgtatgtggatcat
cctgctggttctctctccttctacagagtctcctcggacacactgagccacctccacacc
ttcagaaccacattcactgaacctctctacgttgggttcatgttctgctcagaaggttcc
tcagtgtctctgtgttctctgtag
DBGET
integrated database retrieval system
