Trematomus bernacchii (emerald rockcod): 117471243
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Entry
117471243 CDS
T09643
Name
(RefSeq) aggrecan core protein-like isoform X1
KO
K06792
aggrecan 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tben00535
]
117471243
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117471243
04091 Lectins [BR:
tben04091
]
117471243
Proteoglycans [BR:
tben00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
117471243
Glycosaminoglycan binding proteins [BR:
tben00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
117471243
Lectins [BR:
tben04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
117471243
BRITE hierarchy
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
hEGF
EGF_3
I-set
Izumo-Ig
LPD28
Motif
Other DBs
NCBI-GeneID:
117471243
NCBI-ProteinID:
XP_033971995
LinkDB
All DBs
Position
Unknown
AA seq
1531 aa
AA seq
DB search
MIRWIVLLSVSLHVISAAFDYIYEEHSFMDPEDVLSVSIPLEEPQRPLLGATLVLPCYFE
DHTVPDPGAPSIAPLAHRIKWSHVTKEKVTTILVALEGQVLISESYLDRVHLVGYPMTST
DASIKISELRSSDTGVYRCEVQHGIEDNHDIVHVQVQGMVFHYRAIIGRYSLTFEKAKAV
CMQNSAVMASPEQLQAAYDDGFHQCDAGWLSDQTVRYPIRDPRVNCYGDKEELPGVRTYG
VRDLNETYDVYCFTEKMTGRVFYTAAAEKFNFSEAEFACSSQGAQLATTGQLYLAWQGGM
DVCNAGWLADRSARYPINIRRPQCGGGLLGVRTVHLYTNQTGYPLPESRYDAFCYTESSD
EEGSGIIEEGSGLLSVTEVTLSPEVFFRRTTTESEAVGEVETQQPTQVDFTESPIQLPLP
QPPNVTELVVDLIEPATARPDTRREPGKGFVMPPTGVVFHYRSGSSRYAFTFVEAQLACQ
SVGASIATPKQLQAAYKAGYHQCDAGWLLDQTVRYPIVFPREKCDGDLGELPGVRSYGLR
PGDERYDVYCYIDGIKGEVFHVGSAEGLTYDEASSSCQEQNAVLASPGELYAAWKMGFDK
CRAGWLVDRSVRYPINKPRNGCGGGKPGVHTVHAHPDQIGSPELDARFDAYCFRVDFLLI
ANETGLNITDIEAALLNLTSITDLLKPAVPSIVAPIPVETSGSGSGSADFGSGSAVDGAS
GGHSGDLAGSGDLSGSGDHVTSGESSGSGAFSGFGRLSGSGDLSGSGDLSGSGHLSGSGD
LSVSGDLSGSGDLSSSGDLSVSGDLSGSGDLSGSGDLSSSGDLSVSGDLSGSGNLSSSGD
LSGSGHLSGSAELPSGASGFNSADASGSALSGEGSGITVVFSGMDSIVSGDGSASGGLQE
AGEGSTGIFIFPSSESGSGMLSGSGDLSGSGFSSAESGSSIDSSGESGQFSGMFSGFITG
QDFSGFSGFPSGFSSGSASGHSGELSGSGDSQILLIDGQLIDASISTTNKEYELGGGLLA
FSGSGDISGSGIISGDLSGSASGSGSGFFSSGVTFIGSGFTDLTVSSSGEQEASGLLLYS
SGQGSGGHLSGFGSSSFISGSGSGMSGSESSTSGEESSVTFLSGDFTSEVSGDTTLSMEL
GDGSVEYSGEGSSSSSGLSSGSGDNHLSTASGSSSGSSSGDLPTVVPPSPSSSWALTEST
IGPEEVHGLVEPTQIPVDVYGTPYSVLAPAGLAAPPTAASPTSVQTPGFVKGTDSLEGFN
PCEPNPCGASLCIVEDGVAVCHEVDVCHPNPCANGATCVESADSYKCLCLPSYGGERCEI
DEQQCEDRWTKFQGNCYRHFSDRKLWLDAEQQCRDMNAHLASIITPEEQDFVNTNGQDYQ
WIGLNDKTVANDFRWTDGTPLQYENWKLNQPDNYFNSGEDCVVMIWHQNGQWNDVPCNYR
LPFTCKKGPVSCGAPPEVENSHMFGNKRDEYPVNSIIRYQCNPGFLQRHPPVVRCKADGQ
WEEPQVECTDVKARKRTQPSTNRMAAGGKLH
NT seq
4596 nt
NT seq
+upstream
nt +downstream
nt
atgataaggtggattgtgttgctgtctgtgagtctacatgtcatctcagcagcatttgat
tacatttatgaagagcactcatttatggacccagaggatgtgctgagcgtgagcattcct
ctggaggagccacagcgtcctctactgggagcaacgttggtgctaccgtgttactttgag
gaccacactgtcccagacccaggagctccctccatcgctccgctcgctcatcgaatcaaa
tggagccacgtcactaaagaaaaagtcacgactatcttagtggccttggaaggacaggtg
cttatcagtgagagctacctggacagagttcatctggtgggctaccccatgacttctaca
gatgctagcatcaagatatctgagctgcggtccagtgacacaggagtctaccgatgtgag
gttcagcacggcattgaggacaaccacgacatcgtccatgtgcaggttcaaggtatggtg
ttccactaccgagccatcattggccgctacagtttgacttttgaaaaggctaaggcagtt
tgcatgcagaacagtgcggtcatggcttcacctgaacagcttcaagcagcctacgatgat
ggcttccaccagtgtgacgctggctggctctccgaccagaccgtcaggtacccgatccga
gatcctcgtgtgaactgctatggcgacaaagaggagcttcctggggtcaggacatatgga
gtgagagacctcaatgagacttatgatgtctactgcttcactgagaagatgacagggaga
gttttctacactgctgctgcagaaaagttcaacttctcagaggctgagtttgcatgctcc
agtcagggagctcagttggccactactggtcagctgtacctggcctggcagggtgggatg
gatgtctgtaatgccggctggctggcagacaggagcgcccgctaccctattaacatccgt
cggccgcagtgtggagggggtctgttgggggtgcgaactgtgcacctctacacaaaccag
acaggatacccacttcccgagtctcgctacgatgcgttctgctacacagagtccagtgat
gaggaaggttcaggcatcatagaagaaggaagtggtttgctgagtgttactgaggtgaca
ctgagcccagaggtgttcttcaggaggacaaccacagagagtgaggcggttggagaggtg
gagactcagcagcctacccaagtggacttcacagagagccctatccagctgccgctacct
cagccaccaaacgtcactgagttggtggttgacctgatagagccggccaccgcccgaccc
gacacacgtagggaacccggcaaaggctttgtgatgcctcctactggtgtggtgttccat
tatcgttcaggctccagccgctatgctttcaccttcgttgaggcccagctggcctgccaa
agtgttggagcctccatagccacgccaaagcagctgcaggcagcatacaaggctggatat
caccagtgtgatgctggatggttactggaccagactgtaaggtatcccattgttttccct
cgagaaaagtgtgatggagatctaggggaactacctggagttcggtcatatggtttaagg
ccaggagacgagagatatgatgtgtactgttacattgatggtatcaagggggaggttttc
catgtgggttccgctgagggtctcacctatgatgaagcttcttctagctgtcaagagcag
aacgcagtactagcctcccctggagagctgtacgcagcctggaaaatgggttttgacaag
tgtcgcgctggctggctagtggatcgcagcgttcgttatcccatcaacaaaccccgtaat
gggtgtgggggtgggaaaccaggagtacacactgttcatgctcaccccgaccagataggc
tctcctgaacttgatgcaagatttgatgcatactgttttagagtggattttctactaatt
gcaaatgaaactggactgaacatcacagatatcgaagcagccctccttaacctaacatca
attactgatttgttgaaacctgctgttccttccattgttgctcctattcctgtggagact
tcgggctctggctccggctctgcagactttggctcggggtctgccgttgatggtgcctct
ggtggtcactcaggagatctggctggatctggtgacctgtctggttccggtgatcatgtt
acctctggagaatcgtctggttctggagcattttctggttttggacgtttgtctggttct
ggagacctttctggttctggagacttatctggatctggacatttgtctgggtctggagac
ctatccgtttctggagacctatccggttctggagacctatccagttctggagacctatct
gtttctggagacctatccggttctggagacctatccggttctggagacctatccagttct
ggagacctatctgtttctggagacctatccggttctggaaacctatccagttctggagac
ctatccggttctggacacctatccggcagtgccgagctgccaagtggggcatcaggtttc
aacagtgcagatgcttctgggtcagctctcagtggtgaaggatccggcatcactgtcgtt
ttttcgggaatggacagcattgtatctggagacggctcagcttcaggaggactccaagaa
gctggagaaggaagcacagggatctttatattcccttcatctgaatcaggctctggaatg
ctcagtggtagcggggatctgtctggatctggtttcagctctgcggagagtggctcttcc
atagacagctctggggaaagtggacagttttctggcatgttctccggtttcatcacaggc
caggacttttctgggtttagtggtttcccatcaggattctcttcaggaagtgctagtgga
cactcgggagagctttcgggaagtggagactcacagatcttactaatagatggacaactt
atcgatgcgtctatctctactaccaacaaggagtatgagcttggtggaggcctactggcg
ttcagtggctctggagacatctcagggtctgggattatcagtggggatctcagtggctcg
gcctctggaagtggctctgggttcttctcctcaggcgtgacctttattgggtcagggttc
accgacctaacagtgtcatcctctggagagcaggaagcctctggtttattattgtacagc
tctggacagggaagtggtggacatttgtctggatttggaagctcaagtttcatctcgggt
tctggatcaggaatgtctggatctgagtcctcaacgagcggagaagaaagcagtgttaca
tttttaagtggggattttacgtcagaggtatccggagacactacactgtctatggagctt
ggagacggatcagtggagtacagtggagaaggaagcagtagcagcagtggtttgtcctct
ggcagtggagacaaccacttatccacagccagtggctcttcttcaggatcttcctctggg
gatctgccgacggtggtgccaccctcaccatccagtagctgggcactgactgagagcacc
atagggccagaggaagtccatggtctggtggaaccaacccagatccctgtcgacgtctat
ggaactccatactctgtactcgcccccgcaggactggctgcccctcctaccgcagcttca
ccaacctcggtgcagacaccaggctttgtgaaaggaactgattcactggagggttttaac
ccgtgtgaacccaacccctgtggtgcttctttatgcatagtagaggatggggttgctgtc
tgccatgaggtagatgtgtgccatcccaacccgtgtgccaatggagccacctgtgtggag
agtgcagactcttacaaatgcttatgcctgccaagctacggaggggaacgatgtgagatc
gatgagcagcagtgtgaagaccgttggactaagtttcaggggaactgctaccgacacttc
tctgacagaaagttgtggctggatgcagagcagcagtgcagggacatgaacgcccacctg
gccagcatcatcaccccagaggagcaggacttcgtcaacacaaacggacaggactaccag
tggatcgggctgaatgacaagaccgtagcgaatgacttccgctggacagatggcactcca
ctgcaatacgagaattggaagctgaaccaacctgataattacttcaactcaggagaagac
tgtgtggtgatgatctggcatcagaacggccagtggaatgacgtgccgtgcaactatcgc
ctgccgttcacctgcaagaaaggccccgtgtcctgtggcgccccgcctgaggtggagaat
tcccatatgtttggtaacaagagggatgaataccctgtcaactccatcatccgctatcag
tgcaacccagggtttttacagcgccaccctccggtggtccgatgtaaggcagatggtcag
tgggaggagccccaagtggaatgtactgacgttaaagccagaaaaagaacacagccgagc
accaacaggatggcagctggtggcaagcttcactag
DBGET
integrated database retrieval system
