Trematomus bernacchii (emerald rockcod): 117471303
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Entry
117471303 CDS
T09643
Symbol
lingo1b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117471303 (lingo1b)
Membrane trafficking [BR:
tben04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
117471303 (lingo1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
ig
Ig_2
LRR_9
LRR_Zer-1
Ig_C17orf99
LRR_RPS2
V-set
LRRNT
CHRD
Motif
Other DBs
NCBI-GeneID:
117471303
NCBI-ProteinID:
XP_033972080
LinkDB
All DBs
Position
Unknown
AA seq
623 aa
AA seq
DB search
MTVLVRNRMVFGEAGGHSYLVACWQPILILMLGTVLSGSTTGCPSRCDCNGQERSVACNR
RRLATLPEGIPTETRLLDLSKNRLKTLGPEEFINYPQLEELQLNENIISSIEPGAFGNLN
NLRTLGLRNNQLKLIQLGVFTGLTNLTQLDISENKIVILLDYMFQELYNLRALEVGDNDL
VFISPRSFHGLSNLESLNIEGRNLASVPTDALSHLHNILSLQLRYLNVTVMRDYSFKRLY
RLRVLEISQMPALDTMSAKCLYGLNLTSLSITNCNLTVIPYQAISHLRHIRFLNLSFNPI
HTVEGNKLFNLQKLQAFHLAGGRLAAIEPYSFRGLNHLRVLNVSSNSLNTLEESVFHSVG
NLETLALYDNPLACDCRLLWVFRRRWRLNFNRQQPVCASPDLVQGKEFKDFPDILPSDYF
ICQKSKIMDYKVQESHVDEGTTVHFACKAEGNPGPVIMWLSPKKNYITTKSAVSRLSVSN
EGTLEVRYAQIQDNGTYLCIASNAAGNDTKAAHLFVHSYSPNWPQQSNKSFAFISNQPSD
EGANVTRATIPFPFDVKTLIIATTMGFISFLGVVLFCLVILFLWSRGKNNIKSSIEVEYV
PRKEEPEEASPTEEPIQFNMKIM
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcctggtacgcaataggatggtgtttggcgaggcaggagggcacagctacttg
gtggcatgctggcagcccatcctgatcctcatgctgggcaccgtcctctctggctccacc
accggttgcccctcccgatgtgactgcaacggtcaggagcgttcagtcgcgtgcaatcga
cggagactggcaactcttcctgagggcatccccacagagactaggctgctagaccttagc
aagaaccgtctgaaaacactggggcccgaggagttcattaattaccctcaactggaggag
ctgcaactcaacgaaaacattatttcgtccattgaaccaggggcttttggcaatctcaat
aaccttcgaactctaggtttgcgtaacaaccagctaaagctcattcagctgggggtgttc
acaggcctgaccaacctcacccagctcgatataagtgaaaacaaaattgtcattctgctc
gactacatgttccaggagctctacaacctgagggctctggaggtaggcgacaatgacctg
gtattcatctcaccccgatcatttcatggcctaagcaaccttgaaagcctcaacattgag
ggacgcaatctggcctcagtgcccactgatgccctgagccatctgcataacatcttgtca
cttcaattacgctatctcaacgtcactgtcatgagggattactcctttaaaaggctctat
cgactcagagtgctggagatttctcaaatgcctgccttggataccatgagcgcaaaatgc
ttgtatggactcaacctcacatcattgtccatcacaaactgtaatcttacggtcatcccc
taccaagccatcagtcacctaaggcatatccggtttttgaatctgtctttcaatcccatt
cataccgtggagggaaacaaactgttcaatctgcagaagctccaagcttttcatttggcc
ggtggaagattagctgccattgaaccctactcattccgagggctcaaccacctccgtgta
ctcaatgtgtccagcaacagcctgaacaccctagaggagtctgtgttccactcagtggga
aacctggagactctggctttgtatgacaacccgttggcctgtgactgtcgcctgctctgg
gtctttcgccggcggtggaggctcaactttaacagacaacagcccgtgtgtgcatcacct
gaccttgttcaagggaaagagttcaaagatttcccagacattctcccatccgactatttc
atctgccagaaatcaaagataatggattataaggttcaagaaagccatgtagatgaagga
actacggttcatttcgcttgcaaagctgagggaaatccaggccctgtgataatgtggctg
tcccctaagaagaattacatcactaccaaatctgcggtgtcaagactttctgtgtctaat
gagggcacactggaggtgcgatacgcccaaatccaagacaacggcacctacttgtgcatt
gcaagcaatgcagcaggcaatgacaccaaagctgctcacctttttgtgcatagctactcc
cccaattggccccaacagtcaaataagtcatttgccttcatttccaaccagcccagcgat
gaaggagctaatgtgacccgggccaccattccatttccgtttgacgttaagacacttata
attgcaaccaccatgggatttatctctttccttggagttgttctcttctgtcttgtaata
ttattcctctggagtcgcgggaaaaacaatatcaagtcgagtatagaggttgaatatgtg
ccacgtaaagaggaaccagaggaggccagtccaactgaggaacccatacaattcaacatg
aagatcatgtga
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