Trematomus bernacchii (emerald rockcod): 117471389
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Entry
117471389 CDS
T09643
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117471389
04091 Lectins [BR:
tben04091
]
117471389
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117471389
Lectins [BR:
tben04091
]
C-Type lectins
Others
117471389
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
SUEL_Lectin
Lectin_C
Ion_trans
REJ
GPS
PKD
Motif
Other DBs
NCBI-GeneID:
117471389
NCBI-ProteinID:
XP_033972250
LinkDB
All DBs
Position
Unknown
AA seq
2494 aa
AA seq
DB search
RLSVWKHISAAHGRTQQQPVEAGGQTREDTEALSCPESQEDFDGSCYEFVGLQRSFLSSQ
GWCERGGGHLAFILNDETQQFLQKHLDPEKEWWLGLAPAAPNLTIDSAATDGSLAWLDGS
DVSYSNWVNMPDADAACGHILKQSGFQWEAAGNCSQELNFICQFDSGRYIACDGKNATVQ
CGSGQLVEIDDSFYGRKTIHYCRLNPAASPTSSQEECSWIDVTDSVKANCQGRQACQAPV
DLSSFGEPCAVLGSYLSVEYTCKHGLHLLLSKLAAVFDNVPITVKWLLHPFQGNLTCTLN
AGDGHNIDPYSPEEMESTVMHTFNRPGVFMVVVECTTKDYRVTAQKAITIQEPVKDFGVI
KCFSRNMSTDGTKCNALNGRPVKIQVIVTAGTNVSYSIQHEGHLVANSSAERGMEPHNMT
LSAGLVEKLGPGCHNLTLTASNRVTAHALTTDLGLCLLEPIEGLQASVIAEDDECPDSTD
LIFGVSVERGAPVELLFTLTGVRDTLSETRDMLNGSLQAYTFTSPLKGLLKVKVRAMNAF
SDSDVDVDLENIVRACLNYSDSTPDKQANGTGSVSTNDFKITAAPDTVVDYSQSVTLSAT
GTESLSSKGLKFEWKCKGNCKCKNKTKDETHVIEKDCLPNPFDFFNYTLTVRRTTWFREW
VDFASASKCITVAPKEFKDVTISCDDCASLNVNDNVSLRMRCVTTCPEVVWYIEDPKPAT
DDLETCYSEAGRKPPIERQEGITEYVVHSQHLKVSRETSHNISVIAYGQNEPGFAKYTLP
LPGPEPTEPAATDAPAELIPPSCSISPESGTVLDAFDITCQASSFCSTGCLYCFKTETGK
HLRCSNANEVKSVFLPLGDANNNYSLSVVVTMKNEYEKATTTVSTQVRKSSSSKSVEALQ
SAVEDSLSQLEQQGLLSGEALGQIFTSVSDMLNTEDDKDQKDARTELRKQMLTKMTKVLL
DSPSNTTQEVQVTARAVAGLTQRPDELTPAAQEEAGSLLADLSFSLNTISVNQEDGDDGE
VVQAATPIVEAASNILNVSSNKKVSDFLLTGIGNVQSALLNNKKLNGDPAIIESGQISVY
VNRVSSEKMNLQDINVQKNSSSRFSFPKLPAHIVSPEEPVDVRMMSFEKNPYSWKGGNIT
GTVGSVSLTRVNGTVIPVENLPDEIEILLPRLDVGQENSTVLDLANYSTLIIDVPSPDVT
LVLKMEPSENISFVIFLGFKDYPNNENYIAKTQFPLENAKEEEKYTWVLSPKDRGGEVGE
HYLVMKPIIEPGVKSINATVTVISIAAQCKYWNETDTSWSEDGCRVGPLTTPLVTQCLCN
HLTFFGSSFFVMPNLVDVSRTAELFATFTTNPVVVCFVGAIFAAYFLVVVWARRKDIQDS
AKVKITVLEDNDPLAEYRYMLNISTGHRHGASTSSQVTITLLGTEGESDPHHLTDHEKPV
FERGGGDMFLLTTHFSLGDLQSIRLWHDNSGAHPAWYVNKVTVQDLENGQKWHFLCNSWL
AVDVGECSPDKVFPVATEMDLKQFSNLFFMKTAKDFRDGHIWFSVISRPPCSTFTRVQRV
SCCFSLLLCTMLTSIMFWGIPTDPSEQTMDLGHIEFTWQQVMIGIQSSIIMFPINLLIVS
IFRNTRPREKGAKTDTSKQGKTGRVSPKETSSPQKELKDITPDTVIKDIKRIAQSLSKAM
KSPLPHLELRPGHQTDINTLLSLVEDIIRQQNRADGDFYTEASKRDRSMILSLRAVNLQE
NSVCGSPERTSEGVQKKSNNSRYLYKQLRHVEKELGLLGPSRFPNPDSFNRAMQQVQGMK
GLLEYHLPSSDLEGEQLDGSLSPDESINGDSTKKRSQGGLPWWFVFIGWILVIATSGVSG
YFTMMYGLTYGKDRSISWLISMLVSFFESLFITQPLKVLGFAAFFALVLKKVDQEEYGEP
QLEDNLRNPDDPDAVRAARRDSTCSFYQPPPPTDIEKIRNNMIKEQKVFALVREILAYMG
FMWMLLLVAYGQRDPNAYFLTQHIRQSFSKGISESMSIRDVFDWANTTLLSNLFGEYPGF
ITDGNSKLVGNARLRQVRVLPNSCHVAPSMQKSVPDCHALYSWEMEDMGSYGPGWSRSEG
DNTSLNLQSPWTYQSQRKLRAYPIWGNVMLYRGGGFVVDLGPDLQNSSRSLQYLYDNTWF
DVYTQAVFVEFTVYNANVNLFCIVTLMLETTALGAFQFRSELQSVRLYQSTGGLHIFVMA
SEAIYFLFIFYYMFIQGKLMKQQRWTYLKSKLNLLELAIIILSWSALSVFIKRTLLGNRD
MDYYQNNKDQYASFHETAKADAVLGYLIAFLVLLATVKLWHLLRLNPKLHMITATLQRAW
TDISGFLVVMTIMFMAYSIASNLMYGWKLYSYRTLMDSAQTMVSLQLGIFNYEEVLDYNP
VLGAFLIGSCIVFMTFVVLNLFISVILVAFTQEQIHHKPSEEEEIVDLMLMKLFSLFGLK
SKKPGGDGLSDRPVVSSAPQNGLSTISSGNMCDG
NT seq
7485 nt
NT seq
+upstream
nt +downstream
nt
cgtctgtctgtgtggaaacacatctctgctgcacatggccggacacaacaacaacctgtg
gaggcaggaggacaaacgagggaggatacagaagctctatcctgcccagaatcccaggag
gactttgacggctcatgctatgagtttgtgggtctgcagcgatccttcctcagctcccag
gggtggtgtgagcgaggcggaggacacctagccttcatcctaaatgatgaaacccagcag
ttcctccagaagcacctggacccggagaaggaatggtggctcgggctggcacctgccgct
ccaaacctcacgatcgactctgctgccaccgatggttcccttgcctggctggatggctca
gatgtcagctatagtaactgggtgaacatgccagatgcagatgcagcctgtggacatatc
ctaaaacagtcaggttttcagtgggaagcggcaggaaactgcagccaggaactcaacttc
atttgccagtttgattctgggagatatattgcctgtgatgggaagaatgcaacagtacaa
tgtggttcgggtcaacttgtagagatagatgacagcttctatggtcgaaaaacaattcac
tactgccgattaaaccctgctgcctcacccacatcctcccaggaagagtgcagctggata
gatgtgacggattctgtaaaagctaattgccaaggacggcaggcgtgccaggctccagtg
gatctgagctcttttggtgaaccatgtgctgtgctgggaagttacctgtctgtagagtac
acctgcaaacatgggcttcacttgttgttgagcaagctggcggccgtctttgataatgtc
cccatcactgtgaagtggctccttcatccttttcagggaaacctcacatgcacactgaat
gctggagatggccacaatattgatccatacagcccagaagagatggagagcactgtgatg
catacattcaaccgacctggtgttttcatggtcgttgtggagtgcactaccaaagattac
cgtgttacagctcaaaaagcgataaccattcaggagcctgttaaagattttggtgtcatt
aagtgctttagcagaaatatgtcaacagatggcactaaatgcaacgctctcaatggcagg
cctgtgaagatccaggtgatagtgacagcgggtacaaatgtttcctactcaatccaacat
gaaggccatctggttgcaaactcgtcagcggagagagggatggaaccccacaacatgacg
ctgagtgcaggtttggtggagaagcttggaccgggctgccacaacctgactctgactgcc
tctaacagagtcacagcccacgcactgaccactgatctggggctgtgtctgctggagccc
attgaaggcctgcaggcctcggtgatagcagaggacgacgagtgtcctgactctactgat
ctcatctttggtgtttcggtggagcgaggagcccctgtggagctgctcttcactctgact
ggagtcagggacacgctctccgagacaagagacatgctcaatggcagcttacaagcttat
acgttcaccagcccactcaaagggctgttgaaggtgaaggtacgagccatgaatgccttc
tctgattctgatgtggacgtggacttggagaacattgtccgggcttgcctgaattattct
gactccaccccagataaacaagcaaacgggacaggtagtgtgagtacaaatgatttcaaa
ataactgctgctccggacactgtggttgactactctcagagtgtcacactgagtgcgact
ggaactgaatcattgtccagcaaaggactgaaatttgaatggaaatgtaaaggaaactgc
aaatgcaaaaacaaaacaaaggatgaaactcatgttattgaaaaagattgccttccgaat
ccctttgatttcttcaattacactttaactgtgaggaggaccacctggtttagggaatgg
gttgactttgcgtcagcttcaaagtgcattactgtggctccaaaagaattcaaagatgtc
accataagttgtgatgattgcgcttcattaaatgtcaatgacaatgtaagcctcagaatg
aggtgtgtgacaacctgcccagaggtagtttggtatattgaggacccaaaacctgcgaca
gatgacctcgaaacatgttactctgaagcgggaagaaagccacctattgagaggcaggag
ggaatcactgaatatgttgtgcacagccaacatctgaaggtttcaagggagacttcacac
aacatcagtgtaattgcttatggtcagaatgagccaggttttgccaagtacactcttcca
ttacccggtcctgagccaactgaaccagctgccactgatgctcctgcagagctcattccc
ccatcatgtagcatctctccagagtcaggaactgttcttgatgcttttgacatcacctgc
caagcaagctctttctgctccacaggctgtttgtattgcttcaaaacagaaacaggaaaa
catctgcgctgcagtaacgcaaatgaggttaaatctgtcttcctgcctctcggagatgcc
aacaacaattacagtctgtctgttgtggtgactatgaaaaatgagtatgagaaagccacc
acaactgtctccactcaggtacgtaaaagcagctccagtaagtctgtggaggcgctccag
tctgcagtggaggactcgctgagtcagttagagcagcagggtcttctctctggagaggca
ctcggacaaatattcacttcagtttctgatatgctgaacacagaggacgacaaagatcag
aaggatgcaaggacggagctaaggaagcaaatgctgacaaaaatgaccaaagtactgctg
gactcacccagcaacacgactcaggaagtgcaagtgacggccagggctgtggccggactc
acccagcggccggacgagctcacacccgctgctcaagaagaagcaggttcattgttggca
gacctcagcttctcactcaacaccatcagtgttaatcaggaggacggagatgacggagaa
gtcgtgcaggcggctacaccaatagtcgaagcagccagtaatattttgaatgtttcgtcc
aataaaaaagtctcagattttcttcttactgggataggaaatgttcaaagtgctttgctg
aataataaaaagctgaatggagaccctgccatcattgaatctggtcagatcagtgtgtat
gtaaacagagtgtcttcagaaaagatgaatttgcaggacataaatgtccagaagaacagc
tcctccagattttccttccccaaactgcctgctcatattgtctctccagaggagccagtg
gatgtcagaatgatgagttttgagaagaacccatattcttggaaggggggaaacatcaca
ggaactgttgggtctgtctctctcaccagagtgaacggcactgtcattcctgtagagaat
ttacccgacgagatagagattctcctacccaggcttgatgttgggcaggagaacagcaca
gtgctagacctggccaattacagcacattaataattgacgttccctctccggatgttaca
ctggtgctaaaaatggagccgtcggaaaacatctcctttgtgatattcctgggatttaaa
gattatccaaataatgagaattatatagccaagacccagttccctctagagaatgccaaa
gaagaggaaaaatacacctgggtgctgagtcccaaagacagaggaggagaagtcggagag
cactacctggtcatgaagcccattattgagccaggcgtaaaatccatcaacgccacagtc
actgtcatttccatcgctgcccagtgcaaatactggaatgaaactgacacttcttggagt
gaagatggctgcagggtcggtcctctcaccacgcctctggtcacccagtgtctctgtaac
cacttaactttctttggcagctctttctttgtcatgcccaacttggtggatgtctcacgt
actgcagaactgtttgctacattcaccaccaatcctgtggtggtgtgttttgtgggggcc
atctttgctgcttatttcttggtggttgtgtgggcacgcaggaaagacatccaggactca
gctaaggtcaagataacagtactggaggataatgaccccttggcagagtatcgttacatg
ctgaatatcagcacagggcatcggcatggtgcatccacctcctctcaggtgacgataacc
ctgctgggcacagagggagaaagtgacccccaccacctgacggaccatgagaagccagtg
tttgagaggggtgggggggacatgttcctgctgacaacacacttttcactcggagatctg
cagagtatcaggctgtggcacgacaactcaggagctcatcctgcatggtatgtcaacaaa
gtgacggtgcaggatctggagaatggtcagaaatggcacttcctgtgtaactcctggctg
gctgtagatgtgggagagtgctctccagataaagtgttcccagtagcaaccgagatggat
ttgaagcagtttagtaacctgttctttatgaagacagccaaggattttagggacggccac
atctggttctctgtcattagtcggcctccctgcagcactttcactcgtgttcagcgagtg
tcctgctgtttttccctgctgctgtgcaccatgctgaccagcatcatgttttggggcatc
cccactgacccctctgagcagactatggacctgggtcacatcgagttcacctggcaacag
gttatgattggcattcaaagttcaatcatcatgtttcccattaatctcctgatcgtgagt
atcttcagaaacactcgtcctcgagagaagggcgccaagacggacacatctaaacaagga
aagactggtcgggtttctcccaaagagacgtcttcccctcagaaagagttgaaggacatc
acaccagatactgtgatcaaggatataaagagaattgctcagtcactctctaaggccatg
aagagtcctctgcctcacctggagctccggcctggacatcagacggacatcaacacgctg
ctgtctctggtggaggacatcatacggcagcagaaccgtgctgatggagacttttacact
gaggcctctaaaagggatcgctctatgattctcagcttacgagcagttaatctacaagaa
aacagtgtgtgtgggagccctgagaggacttcagaaggggttcagaagaagagcaacaac
agtcggtacctgtacaagcagctgcgtcatgttgagaaggagctgggtttgctgggtccg
tctcgctttcccaacccagacagcttcaaccgagccatgcagcaagttcaggggatgaag
ggtctcctggagtaccacctcccctcgtctgacctggaaggagaacagctggacggcagc
cttagtcctgatgagagcatcaacggagactccaccaagaagcgatcccaaggagggctg
ccgtggtggtttgtgtttattggctggattctggtgatcgcaaccagcggcgtttcagga
tacttcaccatgatgtacgggctgacgtacgggaaggaccgctccatcagctggctaatc
tccatgttggtctctttctttgagagtctctttattactcagccgctgaaggttcttgga
tttgctgctttcttcgctcttgtcctgaagaaagtggaccaggaagagtacggagagcct
cagttagaggacaatctgagaaacccagatgatcccgatgcggtgcgtgcagcaagaaga
gacagcacatgcagtttctatcagccgcctcctcctactgacatcgagaagatcagaaac
aacatgattaaagaacagaaagtcttcgccctcgtaagagagattcttgcctacatggga
ttcatgtggatgttgctcctggtggcgtacggtcagagggaccccaacgcttactttctg
acccagcacattcgacagagcttcagcaaagggatctcagagagtatgagcattcgggat
gtgttcgactgggccaacacaactctgctgagcaacttgtttggagagtacccaggattt
atcactgatggaaactccaagctggtgggtaacgctcgtcttcgccaggtgagggtgctt
ccaaactcctgccatgtggctccctccatgcagaagtctgtgccggactgtcacgctctg
tactcctgggagatggaggacatgggctcctacggtccaggatggagccgctctgagggg
gataacacctcgctgaaccttcagagcccgtggacgtaccagtcccagagaaaactgagg
gcctaccccatctggggcaatgtgatgctctacagaggaggagggtttgtggtggatctg
gggccagatttacaaaattccagcagatcccttcagtacctttatgacaacacctggttt
gatgtgtacactcaagcggtctttgttgagttcaccgtgtacaatgccaacgtcaacctc
ttctgcattgtcactctcatgctggagaccacagctttaggagctttccagtttcgcagt
gagcttcagagcgtgcgcctttaccagtcaaccggtggccttcacatctttgtcatggcc
tctgaagccatttacttcctctttatcttctattacatgtttatccagggaaagctgatg
aaacagcagagatggacttatctcaagagtaagttgaacctgctggagctggccatcatc
atcctcagctggagcgcgctgtccgtcttcatcaagaggactttactgggaaaccgggac
atggactactaccagaacaacaaagaccaatatgccagtttccatgagacagccaaggcg
gatgcggtgctggggtatctgattgccttcctggtactgctggctacagtcaaactgtgg
cacctgctgagactgaacccaaagctgcacatgatcacagccaccctgcagcgagcctgg
actgatatctcaggctttctggtggtcatgacgatcatgttcatggcctactctattgct
tctaacctgatgtatggctggaagctttactcctatcgaactctgatggattctgcgcag
accatggtcagcctgcagcttggcatttttaactatgaagaggttctggattacaatcca
gtgcttggagcttttctcatcggctcctgcattgtgttcatgacctttgtggtgctgaac
ctgttcatctctgtaattctggtggcattcactcaagagcagatccatcacaagccatcc
gaagaggaggagattgtggacctgatgttgatgaaactcttcagtttgtttggactgaaa
tctaagaaaccaggtggcgacggcctctctgataggccagtagtttcatctgctccacaa
aatggactctccacgatttcttctgggaatatgtgtgatggttga
DBGET
integrated database retrieval system
