KEGG   Trematomus bernacchii (emerald rockcod): 117471454
Entry
117471454         CDS       T09643                                 
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03420  Nucleotide excision repair
tben04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117471454 (ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117471454 (ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tben04121]
    117471454 (ddb1)
   03400 DNA repair and recombination proteins [BR:tben03400]
    117471454 (ddb1)
Ubiquitin system [BR:tben04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     117471454 (ddb1)
DNA repair and recombination proteins [BR:tben03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      117471454 (ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      117471454 (ddb1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 117471454
NCBI-ProteinID: XP_033972382
LinkDB
Position
Unknown
AA seq 1140 aa
MSYNYVVTAQKPTAVNACVTGHFTSADDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGESSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVGVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGKE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QESKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTMEMEHEVAC
LDITPLGEGGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacagcccagaaacctacggcggtgaacgcctgcgtcaca
ggtcacttcacctctgcagatgacctcaatctgctcatagctaaaaacacacggttggag
atctatgtggtcacagcagaggggctgcggcccgtcaaggaggtgggcatgtatgggaag
attgctgtcatggagctcttccggccaaagggtgagagcaaagacctgctgttcattctc
acatccaagtacaacgcctgcatcctcgaatacaaacagaatggggagagcattgacatc
atcactcgcgcccatggaaatgtccaggatcgtatcgggcgtccgtcagaaaccggtatt
attggaattgtagacccagagtgccgtatgattggcctgcggctgtatgacgggttgttc
aaggtgatcccattggaccgggacaaccgtgagctcaaggccttcaacatcagactggag
gagctgcaggtcatcgatgttcacttcctgtacggctgccaggcccccaccgtctgcttc
atctaccaggatccccaggggcgccatgtgaagacctacgaggtttctctgagggagaag
gagttcaacaagggcccctggaaacaggagaacgtggaggcagaggcgtcgatggtcatc
ccagtgccagagccatttggtggagctataatcataggacaagagtccatcacctaccac
aatggagacaaatacttggccattgcaccacctactatcaagcaaagcaccatcgtctgt
cacaaccgggttgaccccaatggctcccgctacctgctgggggacatggaggggcggctg
tttatgctgctgctggagaaggaggagctgatggacggcacagtggcgctcaaagacctg
catgtggagctgctcggagagtcatccatcgctgagtgtttgacctacttggacaacggt
gtggtctttgtgggctccagactgggcgattcccagttggtgaagctcaacgtggacagc
aatgagcagggctcctatgtgggggtgatggagacgttcaccaatctggggcccatcgtg
gacatgtgtgtggtggacctggagagacagggccaaggccagctggtgacctgctcaggt
gcgttcaaggaaggttctctccgaatcattcgcaacggcattgggattcatgagcatgcc
agcatcgacctgccaggaatcaaaggtttgtggccgctccgctccgaggcaggcaaagag
acagatgacatgctggtgctgtctttcgtgggtcagacgcgagtgttgatgctgagcggt
gaggaagtcgaggagacagaacttcccggctttgtggacaaccagcagacattttactgc
ggcaacgtggcgcaccaacaactcattcaaatcacgtcaggctcagtgcgcctggtgctc
caggagagcaaggcattagtgagcgaatggaaggagccacagggcaggaacatcagcgtg
gctgcctgcaaccacacccaggtggtgctcgccgtgggaagagccctctactacctgcag
atcctggctggagagctcaaacagatcagtaccatggagatggagcacgaggtggcctgc
ctggacatcacgcctctgggggagggtggcggtgagtcgccgctctgcgctgtgggactg
tggaccgacatctcagcccgggtcctcaaactgccctgcttcactgccctgcacaaggaa
atgctgggcggagaaatcatccctcgctcaatcctaatgaccaccttcgagggcagctac
tacctgctgtgtgcgctgggagacggggcgctcttctactttggcctggacctgcagact
ggcgccctgagcgagcgcaagaaggtcacgctgggcacccagcccactgtgctgaggacc
ttcagatccctgtccacttccaacgtgttcgcctgctccgacagacccaccgtcatctac
tcctccaaccacaagctggtgttctccaacgtcaacctcaaggaggtcaactacatgtgc
ccgctcaactctgagggctaccccgacagtctggctctggccaacaacagcactctgacc
atcggcaccatcgacgagattcagaaactccacattcgcacggttcccctctacgagtcc
cccaggcggatctgttaccaggaggtctcgcagtgttttggtgttttatccagcagggtg
gagattcaggatgtgagcggcaccacatctgccgtgcgccccagcgccagcacccaggct
ctctccagcagcgtgagttccagcaagctctttcccagcagcacttctccccacgagacc
tcctttggtgaagaggtggaggttcacagtctgctggtggtggatcagcacacctttgaa
gtcctccatgcccatcagttcctccccagcgagtatgccctcagcatggtgtcatgtcgt
ctgggaaaagacccgtcagtgtattttatcgtcggcaccgccatggtgtacccagaggag
gctgagcccaagcagggccgcatcattgtcttccactacaccgacggtaagctgcaaact
gtggctgagaaggaggtgaaaggagctgtctattctatggtggagttcaatggcaaactg
ttggccagcatcaatagcacagtccgtctgtacgagtggacggctgagaaggagctgagg
accgagtgcaaccactacaacaacatcatggctctttacctgaagaccaaaggagacttc
atcctggtgggagacctgatgaggtccgtcctgctgctggcctacaaacccatggagggc
aactttgaagagattgcacgtgactttaatcctaattggatgagtgctgtggaaatcctg
gatgatgacaacttcctgggggcagagaacgccttcaatctgtttgtctgccagaaggac
agtgcggccaccacagacgaggagcggcagcacctgcaggaggtgggggtcttccacctc
ggggagtttgtaaatgtcttctgccacggctcgctggtgctgcagaacctgggcgagagc
tccacccccacccagggctccgtgctcttcggcaccgttaacgggatgattggtctggtg
acgtccctgtctgagggctggtacagtctcctcctggacctgcagaaccgcctcaacaaa
gtcatcaagagcgtggggaagatcgagcacagcttctggaggtccttccacacagagcgc
aagacagagcaggccacgggattcatcgacggagatctgatcgagagcttcctggatctc
ggtcgagccaagatgcaggaggtcgtcagcactctgcagatcgatgacggcagcggcatg
aagcgtgaggccacagtggacgaggtcattaagatagtggaggagctgacgaggatccac
taa

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