KEGG   Trematomus bernacchii (emerald rockcod): 117471489
Entry
117471489         CDS       T09643                                 
Symbol
cul4a
Name
(RefSeq) cullin-4A
  KO
K10609  cullin 4
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03420  Nucleotide excision repair
tben04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117471489 (cul4a)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117471489 (cul4a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tben04121]
    117471489 (cul4a)
   03400 DNA repair and recombination proteins [BR:tben03400]
    117471489 (cul4a)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tben04147]
    117471489 (cul4a)
Ubiquitin system [BR:tben04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     117471489 (cul4a)
DNA repair and recombination proteins [BR:tben03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      117471489 (cul4a)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      117471489 (cul4a)
Exosome [BR:tben04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117471489 (cul4a)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 117471489
NCBI-ProteinID: XP_033972444
LinkDB
Position
Unknown
AA seq 757 aa
MAEDTRQDKRASFSALTEHNTNGMARSSAVASSKSGASKKLVIKNFKDRPKLAENYTEDT
WLKLRDAVGAIQNSTSIKYNLEELYQAVENLCSYKVSPTLYKQLRQVCEDHVQAQIKQFR
EESLDNLSFLKRMNRCWQDHCRQTIMIRSIFLFLDRTYVLQNSLLPSIWDTGLELFRTHI
VSDSGVQKRTVDGILEQIELERNGETVDRSLIRSLLGMLSDLQVYKDSFEERFLIETNRL
YAAEGQRLMQQRDVPEYLHHVARRLEEENDRIMSYLDQSTQKPLISCVEKQLLGEHMTAM
LQKGLSTMLDGNRVTELCLLYQLFSKVKGGLPTLLQFWRDYIKSFGGEIVCTPEKDKDMV
QDLLDFKDKMDNVAQNCFVRNEGFINAMKEAFETFINKRPNKPAELIAKYVDSKLRAGNK
EATEEELERILDKIMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE
CGAAFTSKLEGMFKDMELSKDIMIQFKQHMQNQSEPSNIELTVNILTMGYWPSYIPMEVH
LPPEMVKLQEVFKLFYLGKHSGRKLQWQPTLGHAVLKAEFKEGKKELQVSLFQTLVLLMF
NEGEEFSVDEIRTATGIEEGELRRTLQSLACGKARVLNKNPRGKDVEDGDRFNFNNDFKH
KLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAVVRIMKMRKTLSHNLLVSELYNQ
LKFPVKPGDLKKRIESLIDRDYMERDKETPNQYHYVA
NT seq 2274 nt   +upstreamnt  +downstreamnt
atggcagaggacacccgacaggacaagagggccagcttctcggccctgacggagcacaac
accaacgggatggcccggagctccgccgtggcctccagcaagagtggcgcttcaaagaaa
ttagtgatcaagaatttcaaagacaggccaaaattagccgagaactacaccgaggataca
tggctgaagctacgagatgcagtgggagccatccagaacagcacctctatcaagtacaat
ctggaggagctctatcaggcggtagaaaacctgtgttcgtataaagtctcccccacgctg
tacaagcagctacggcaagtgtgtgaagatcatgtgcaggcccagatcaaacagtttaga
gaagagtctttggacaacctttccttcctgaagcgaatgaatcgctgctggcaggatcac
tgcaggcaaactataatgatccgaagtatctttctcttcctggatcgtacctatgtgctt
cagaactccctactcccctccatctgggacactgggttggagctgtttcgtacccacatt
gtgagtgacagcggggttcagaaacggacagtagacggcatcttggagcagatagaactg
gagcggaacggagagacagtcgaccggagtctgatcaggagtctgctgggcatgctgtca
gacctgcaggtttacaaagattcctttgaggagaggtttttgatcgagaccaatcgtctg
tacgctgcagagggacagcggctgatgcagcagagagatgtgccggagtacctgcaccac
gtggctcgtcggctggaggaggagaacgatcgaatcatgagctacctcgaccagagcact
cagaaaccacttattagctgtgttgagaaacaacttttaggagaacacatgactgcaatg
ctacaaaaaggactgagcaccatgttggatgggaatcgtgtgactgagctgtgcctcctc
taccagctcttcagcaaggtgaagggcggactccccacactgctgcagttctggagggat
tacattaagtccttcggtggagagattgtctgcactccagagaaagacaaggacatggtg
caagacctgctggacttcaaagacaagatggacaacgttgcacagaactgctttgtgcgg
aatgaaggattcatcaacgccatgaaggaggccttcgagaccttcatcaacaagaggccc
aacaaacccgctgaacttattgctaaatatgtggactctaagttgagagcggggaacaaa
gaggctacagaggaagagctggagagaatcctggataagataatgataatcttccgtttc
atacacggaaaagatgtgtttgaggctttttataagaaggacttggccaagcgtctgctg
gttggaaagagtgcttctgttgacgctgaaaagtccatgctctccaagctcaaacatgag
tgcggagcagccttcaccagcaagctggaggggatgttcaaggacatggaactgtccaaa
gacatcatgatccagttcaaacagcatatgcagaaccagagcgagccgagcaacattgaa
ctcactgtgaacatcctcactatgggctactggccttcatacatacccatggaggtccac
ttgcccccagagatggtgaaactccaggaggtgttcaagttgttctacctggggaagcac
agtgggaggaagctgcagtggcagcccacactaggccacgctgtactaaaggcagagttt
aaggaggggaagaaagagctgcaggtgtcgctgttccagacgctggtgctgctgatgttc
aatgagggagaggaattcagcgtggatgagatccgcactgccacaggcatagaggaggga
gagctcaggcggacgctgcagtccctggcttgcggaaaggctcgcgtcctcaacaagaac
cctcgagggaaggacgtggaggacggagaccgcttcaatttcaacaatgatttcaaacat
aaactgttccgcatcaagatcaaccagatccagatgaaggaaacggtagaggagcaggta
agcaccacagagcgcgtctttcaagacaggcagtatcagatcgatgcagctgtggtgcgt
atcatgaagatgaggaagaccctcagtcacaacctcctggtgtcagagctctacaaccag
ctcaagttccccgtaaagccgggcgatctgaagaagcggatcgagtcgctcatagacaga
gactacatggagcgtgacaaggagactcctaaccagtaccactatgttgcctga

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